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Nucleic Acids Research, 1984, Vol. 12, No. 9 4035-4047
© 1984

CHEMISTRY

1H-NMR study of the {lambda} operator site OL1: assignment of the imino and adenine H2 resonances

Michael A. Weiss1,*, Dinshaw J. Patel2, Robert T. Sauer3 and Martin Karplus1

1Department of Chemistry, Harvard University Cambridge, MA 02138 2Division of Polymer Chemistry, Bell Laboratories Murray Hill, NJ 07974 3Department of Biology, Massachusetts Institute of Technology Cambridge, MA 02139, USA

*To whom correspondence should be addressed

Received October 21, 1983. Revised April 6, 1984. Accepted April 6, 1984.

One- and two-dimensional proton NMR methods are being used to study the synthetic {lambda} operator site O-L1, a 17 base-pair DMA duplex recognized by {lambda} repressor and Cro protein. The complete assignment of the 17 imino protons, which participate in Watson-Crick hydrogen bonding, and of the eight adenine H2 protons, which lie in the minor groove of the double helix, is presented.


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