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Nucleic Acids Research, 1987, Vol. 15, No. 11 4403-4415
© 1987


Articles

Site-directed cleavage of RNA

Susumu Shibahara, Faculty of Pharmaceutical Sciences, Sachiko Mukai, Tohru Nishihara1, Hideo Inoue2, Eiko Ohtsuka, Faculty of Pharmaceutical Sciences2 and Hirokazu Morisawa

1Department of Biochemistry, Kawasaki Medical School Kurashiki 701–01 2Hokkaido University Sapporo 060, Japan Central Research Laboratories, Ajinomoto Co., Inc. Suzuki-cho, Kawasaki 210

Received March 18, 1987. Accepted April 30, 1987.

Using complementary chimeric oligonucleotides containing deoxyribonucleotides and 2'-O-methylribonucleotides (1), enzymatically synthesized RNA (90 mer) were cleaved at a single site with Eschericia coli RNaseH, either at a hairpin loop or at a stem region. Especially, site-specific cleavage occured in even the target region being enclosed within a stable, base-paired stem. The method is proved to be generally applicable to RNA containing secondary structures.


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