Nucleic Acids Research, 1987, Vol. 15, No. 16 6713-6731
© 1987
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DNA unwinding and inhibition of mouse leukemia L1210 DNA topoisomerase I by intercalators
Laboratory of Molecular Pharmacology, Division of Cancer Treatment, National Cancer Institute National Institutes of Health, Bethesda, MD 20892, USA
Received April 28, 1987. Revised July 10, 1987. Accepted July 10, 1987.
The DNA unwinding effects of some 9-aminoacridine derivatives were compared under reaction conditions that could be used to study drug-induced topoisomerase II inhibition. An assay was designed to determine drug-induced DNA unwinding by using L1210 topoisomerase I. 9-aminoacridines could be ranked by decreasing unwinding potency: compound C > 9-aminoacridine > o-AMSA > compound A > compound B > m-AMSA. Ethidium bromide was more potent than any of the 9-aminoacridines. This assay is a fast and simple method to compare DNA unwinding effects of intercalators. It led to the definition of a drug intrinsic unwinding constant (k). An additional finding was that all 9-aminoacridines and ethidium bromide inhibited L1210 topoisomerase I. Enzyme inhibiton was detectable at low enzyme concentrations (< 1 unit) and when the kinetics of topoisomerase I-mediated DNA relaxation was studied. Topoisomerase I inhibition was not associated with DNA swivelling or cleavage.
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