Nucleic Acids Research, 1987, Vol. 15, No. 20 8125-8148
© 1987
Articles |
An analysis of 5'-noncoding sequences from 699 vertebrate messenger RNAs
Department of Biological Sciences, University of Pittsburgh Pittsburgh, PA 15260, USA
Received July 6, 1987. Revised September 23, 1987. Accepted September 23, 1987.
5'-Noncoding sequences have been compiled from 699 vertebrate mRNAs. (GCC)GCCAGCCATGG emerges as the consensus sequence for initiation of translation in vertebrates. The most highly conserved position in that motif is the purine in position -3 (three nucleotides upstream from the ATG codon); 97% of vertebrate mRNAs have a purine, most often A, in that position- The periodical occurrence of G (in positions –3, –6, –9) is discussed. Upstream ATG codons occur in fewer than 10% of vertebrate mRNAs-at-large; a notable exception are oncogene transcripts, two-thirds of which have ATG codons preceding the start of the major open reading frame. The leader sequences of most vertebrate mRNAs fall in the size range of 20 to 100 nucleotides. The significance of shorter and longer 5' -noncoding sequences is discussed.
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S.-H. Goh, Y. T. Lee, N. V. Bhanu, M. C. Cam, R. Desper, B. M. Martin, R. Moharram, R. B. Gherman, and J. L. Miller A newly discovered human {alpha}-globin gene Blood, August 15, 2005; 106(4): 1466 - 1472. [Abstract] [Full Text] [PDF]
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J. Wang, J. Zhang, H. Jiang, C. Liu, F. Yi, and Y. Hu Nucleotide sequence and genomic organization of a newly isolated densovirus infecting Dendrolimus punctatus J. Gen. Virol., August 1, 2005; 86(8): 2169 - 2173. [Abstract] [Full Text] [PDF]
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 R. Rai and A. Kashina Identification of mammalian arginyltransferases that modify a specific subset of protein substrates PNAS, July 19, 2005; 102(29): 10123 - 10128. [Abstract] [Full Text] [PDF]
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 R. P. Peeters, A. W. van den Beld, H. Attalki, H. v. Toor, Y. B. de Rijke, G. G. J. M. Kuiper, S. W. J. Lamberts, J. A. M. J. L. Janssen, A. G. Uitterlinden, and T. J. Visser A new polymorphism in the type II deiodinase gene is associated with circulating thyroid hormone parameters Am J Physiol Endocrinol Metab, July 1, 2005; 289(1): E75 - E81. [Abstract] [Full Text] [PDF]
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J. Vanoevelen, L. Dode, K. Van Baelen, R. J. Fairclough, L. Missiaen, L. Raeymaekers, and F. Wuytack The Secretory Pathway Ca2+/Mn2+-ATPase 2 Is a Golgi-localized Pump with High Affinity for Ca2+ Ions J. Biol. Chem., June 17, 2005; 280(24): 22800 - 22808. [Abstract] [Full Text] [PDF]
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E. M. Jacobson, E. Concepcion, T. Oashi, and Y. Tomer A Graves' Disease-Associated Kozak Sequence Single-Nucleotide Polymorphism Enhances the Efficiency of CD40 Gene Translation: A Case for Translational Pathophysiology Endocrinology, June 1, 2005; 146(6): 2684 - 2691. [Abstract] [Full Text] [PDF]
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Z. Meng, P. H. King, L. B. Nabors, N. L. Jackson, C.-Y. Chen, P. D. Emanuel, and S. W. Blume The ELAV RNA-stability factor HuR binds the 5'-untranslated region of the human IGF-IR transcript and differentially represses cap-dependent and IRES-mediated translation Nucleic Acids Res., May 24, 2005; 33(9): 2962 - 2979. [Abstract] [Full Text] [PDF]
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 Y. Kabeya and N. Sato Unique Translation Initiation at the Second AUG Codon Determines Mitochondrial Localization of the Phage-Type RNA Polymerases in the Moss Physcomitrella patens Plant Physiology, May 1, 2005; 138(1): 369 - 382. [Abstract] [Full Text] [PDF]
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Z. Wang, M. Weaver, and N. S. Magnuson Cryptic promoter activity in the DNA sequence corresponding to the pim-1 5'-UTR Nucleic Acids Res., April 20, 2005; 33(7): 2248 - 2258. [Abstract] [Full Text] [PDF]
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B. Shafer, C. Chu, and A. J. Shatkin Human mRNA Cap Methyltransferase: Alternative Nuclear Localization Signal Motifs Ensure Nuclear Localization Required for Viability Mol. Cell. Biol., April 1, 2005; 25(7): 2644 - 2649. [Abstract] [Full Text] [PDF]
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 A. Lennartsson, K. Pieters, K. Vidovic, and U. Gullberg A murine antibacterial ortholog to human bactericidal/permeability-increasing protein (BPI) is expressed in testis, epididymis, and bone marrow J. Leukoc. Biol., March 1, 2005; 77(3): 369 - 377. [Abstract] [Full Text] [PDF]
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H. Liu, H. Han, J. Li, and L. Wong DNAFSMiner: a web-based software toolbox to recognize two types of functional sites in DNA sequences Bioinformatics, March 1, 2005; 21(5): 671 - 673. [Abstract] [Full Text] [PDF]
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 O. David-Assael, H. Saul, V. Saul, T. Mizrachy-Dagri, I. Berezin, E. Brook, and O. Shaul Expression of AtMHX, an Arabidopsis vacuolar metal transporter, is repressed by the 5' untranslated region of its gene J. Exp. Bot., March 1, 2005; 56(413): 1039 - 1047. [Abstract] [Full Text] [PDF]
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S. Harkins, C. T. Cornell, and J. L. Whitton Analysis of Translational Initiation in Coxsackievirus B3 Suggests an Alternative Explanation for the High Frequency of R+4 in the Eukaryotic Consensus Motif J. Virol., January 15, 2005; 79(2): 987 - 996. [Abstract] [Full Text] [PDF]
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P. S. Beisser, D. Verzijl, Y. K. Gruijthuijsen, E. Beuken, M. J. Smit, R. Leurs, C. A. Bruggeman, and C. Vink The Epstein-Barr Virus BILF1 Gene Encodes a G Protein-Coupled Receptor That Inhibits Phosphorylation of RNA-Dependent Protein Kinase J. Virol., January 1, 2005; 79(1): 441 - 449. [Abstract] [Full Text] [PDF]
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R. Ollinger, M. Alsheimer, and R. Benavente Mammalian Protein SCP1 Forms Synaptonemal Complex-like Structures in the Absence of Meiotic Chromosomes Mol. Biol. Cell, January 1, 2005; 16(1): 212 - 217. [Abstract] [Full Text] [PDF]
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 R. Kalscheuer, H. Luftmann, and A. Steinbuchel Synthesis of Novel Lipids in Saccharomyces cerevisiae by Heterologous Expression of an Unspecific Bacterial Acyltransferase Appl. Envir. Microbiol., December 1, 2004; 70(12): 7119 - 7125. [Abstract] [Full Text] [PDF]
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M. Kurosaki, M. Terao, M. M. Barzago, A. Bastone, D. Bernardinello, M. Salmona, and E. Garattini The Aldehyde Oxidase Gene Cluster in Mice and Rats: ALDEHYDE OXIDASE HOMOLOGUE 3, A NOVEL MEMBER OF THE MOLYBDO-FLAVOENZYME FAMILY WITH SELECTIVE EXPRESSION IN THE OLFACTORY MUCOSA J. Biol. Chem., November 26, 2004; 279(48): 50482 - 50498. [Abstract] [Full Text] [PDF]
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