Nucleic Acids Research, 1987, Vol. 15, No. 20 8451-8466
© 1987
Articles |
Sequence of figwort mosaic virus DNA (caulimovirus group)
Department of Plant Pathology, University of Kentucky Lexington, KY 40546, USA
Received August 21, 1987. Revised September 9, 1987. Accepted September 18, 1987.
The nucleotide sequence of an infectious clone of figwort mosaic virus (FMV) was determined using the dideoxynucleotide chain termination method. The double-stranded DNA genome (7743 base pairs) contained eight open reading frames (ORFs), seven of which corresponded approximately in size and location to the ORFs found in the genome of cauliflower mosaic virus (CaMV) and carnation etched ring virus (CERV). ORFs I and V of FMV demonstrated the highest degrees of nucleotide and amino acid sequence homology with the equivalent coding regions of CaMV and CERV. Regions II, III and IV showed somewhat less homology with the analogous regions of CaMV and CERV, and ORF VI showed homology with the corresponding gene of CaMV and CERV in only a short segment near the middle of the putative gene product. A 16 nucleotide sequence, complementary to the 3' terminus of methionine initiator tRNA (tRNA1met) and presumed to be the primer binding site for initiation of reverse transcription to produce minus strand DNA, was found in the FMV genome near the discontinuity in the minus strand. Sequences near the three interruptions in the plus strand of FMV DNA bear strong resemblance to similarly located sequences of 3 other caulimoviruses and are inferred to be initiation sites for second strand DNA synthesis. Additional conserved sequences in the small and large intergenic regions are pointed out including a highly conserved 35 bp sequence that occurs in the latter region.
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  R. J. Dexter, J. C. Verdonk, B. A. Underwood, K. Shibuya, E. A. Schmeltz, and D. G. Clark Tissue-specific PhBPBT expression is differentially regulated in response to endogenous ethylene J. Exp. Bot., February 5, 2008; (2008) erm337v1. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D. Tieman, M. Taylor, N. Schauer, A. R. Fernie, A. D. Hanson, and H. J. Klee Tomato aromatic amino acid decarboxylases participate in synthesis of the flavor volatiles 2-phenylethanol and 2-phenylacetaldehyde PNAS, May 23, 2006; 103(21): 8287 - 8292. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. C. Snowden, A. J. Simkin, B. J. Janssen, K. R. Templeton, H. M. Loucas, J. L. Simons, S. Karunairetnam, A. P. Gleave, D. G. Clark, and H. J. Klee The Decreased apical dominance1/Petunia hybrida CAROTENOID CLEAVAGE DIOXYGENASE8 Gene Affects Branch Production and Plays a Role in Leaf Senescence, Root Growth, and Flower Development PLANT CELL, March 1, 2005; 17(3): 746 - 759. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. J. Simkin, B. A. Underwood, M. Auldridge, H. M. Loucas, K. Shibuya, E. Schmelz, D. G. Clark, and H. J. Klee Circadian Regulation of the PhCCD1 Carotenoid Cleavage Dioxygenase Controls Emission of {beta}-Ionone, a Fragrance Volatile of Petunia Flowers Plant Physiology, November 1, 2004; 136(3): 3504 - 3514. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. R. Corbin, R. J. Grebenok, T. E. Ohnmeiss, J. T. Greenplate, and J. P. Purcell Expression and Chloroplast Targeting of Cholesterol Oxidase in Transgenic Tobacco Plants Plant Physiology, July 1, 2001; 126(3): 1116 - 1128. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. A. Ciardi, D. M. Tieman, S. T. Lund, J. B. Jones, R. E. Stall, and H. J. Klee Response to Xanthomonas campestris pv. vesicatoria in Tomato Involves Regulation of Ethylene Receptor Gene Expression Plant Physiology, May 1, 2000; 123(1): 81 - 92. [Abstract] [Full Text]
|
|
|
|
 |
|
 M. M. Pooggin, J. Fütterer, K. G. Skryabin, and T. Hohn A short open reading frame terminating in front of a stable hairpin is the conserved feature in pregenomic RNA leaders of plant pararetroviruses J. Gen. Virol., August 1, 1999; 80(8): 2217 - 2228. [Abstract] [Full Text]
|
|
|
|
|
|
D. M. Tieman and H. J. Klee Differential Expression of Two Novel Members of the Tomato Ethylene-Receptor Family Plant Physiology, May 1, 1999; 120(1): 165 - 172. [Abstract] [Full Text]
|
|
|
|
 |
|
 L. Deleu, F. Fuks, D. Spitkovsky, R. Hörlein, S. Faisst, and J. Rommelaere Opposite Transcriptional Effects of Cyclic AMP-Responsive Elements in Confluent or p27KIP-Overexpressing Cells versus Serum-Starved or Growing Cells Mol. Cell. Biol., January 1, 1998; 18(1): 409 - 419. [Abstract] [Full Text]
|
|
|
|
|
|
D. M. Tieman, M. G. Taylor, J. A. Ciardi, and H. J. Klee The tomato ethylene receptors NR and LeETR4 are negative regulators of ethylene response and exhibit functional compensation within a multigene family PNAS, May 9, 2000; 97(10): 5663 - 5668. [Abstract] [Full Text] [PDF]
|
|