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Nucleic Acids Research, 1989, Vol. 17, No. 4 1475-1491
© 1989

MOLECULAR BIOLOGY

New RNA-protein crosslinks in domains 1 and 2 of E.coli 30S ribosomal subunits obtained by means of an intrinsic photoaffinity probe

E. Hajnsdorf, A. Favre and A. Expert-Bezançon

Institut Jacques Monod, CNRS-Université Paris VII, Groupe de Photobiologie Moléculaire 2 Place Jussieu, 75251 Paris Cedex 5, France

Received December 2, 1988. Accepted January 23, 1989.

Functionally active 705 ribosomes containing 4-thiouridine (s4U) in place of uridine were prepared by a formerly described in vivo substitution method. Proteins were crosslinked to RNA by 366nm photoactivation of s4U We observe the systematic and caracteristic formation of 30S dimers ; they were eliminated for analysis of RNA-protein crosslinks. M13 probes containing rDNA inserts complementary to domains 1 and 2 of 16S RNA from the 5end up to nucleotide 868 were used to select contiquous or overlapping RNA sections. The proteins covalently crosslinked to each RNA section were identified as S3, S4, S5, S7, S9, S18, S20 and S21. Several crosslinks are compatible with previously published sites for proteins S5, S18, S20 and S21 ; others for proteins S3, S4, S7, S9, S18 correspond necessarily to new sites.


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