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Nucleic Acids Research, 1989, Vol. 17, No. 7 2503-2516
© 1989


MOLECULAR BIOLOGY

Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS)

C.R. Newton, A. Graham, L.E. Heptinstall, S.J. Powell, C Summers, N. Kalsheker1, J.C. Smith and A.F. Markham

ICI Diagnostics, Gadbrook Park, Northwich, Cheshire CW9 7RA. ICI Cellmark Diagnostics, Blacklands Way, Abingdon Business Park, Abingdon, Oxon 0X14 IDY. 1University of Wales College of Medicine Department of Medical Biochemistry, Newport Road. Cardiff CF2 1SZ, UK and ICI Cellmark Diagnostics, 20271 Golden Rod Lane, Germantown, MD 20874, USA

Received February 23, 1989. Accepted March 2, 1989.

We have improved the "polymerase chain reaction" (PCR) to permit rapid analysis of any known mutation in genomic DNA. We demonstrate a system, ARMS (Amplification Refractory Mutation System), that allows genotyping solely by inspection of reaction mixtures after agarose gel electrophoresis. The system is simple, reliable and non-isotopic. It will clearly distinguish heterozygotes at a locus from homozygotes for either allele. The system requires neither restriction enzyme digestion, allelespecific oligonucleotides as conventionally applied, nor the sequence analysis of PCR products. The basis of the invention is that unexpectedly, oligonucleotides with a mismatched 3'-residue will not function as primers in the PCR under appropriate conditions. We have analysed DNA from patients with {alpha}1-antitrypsin (AAT) deficiency, from carriers of the disease and from normal individuals. Our findings are in complete agreement with allele assignments derived by direct sequencing of PCR products.


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B. Gharizadeh, M. Kaller, P. Nyren, A. Andersson, M. Uhlen, J. Lundeberg, and A. Ahmadian
Viral and microbial genotyping by a combination of multiplex competitive hybridization and specific extension followed by hybridization to generic tag arrays
Nucleic Acids Res., November 15, 2003; 31(22): e146 - e146.
[Abstract] [Full Text] [PDF]


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GeneticsHome page
C. M. Demlow and T. D. Fox
Activity of Mitochondrially Synthesized Reporter Proteins Is Lower Than That of Imported Proteins and Is Increased by Lowering cAMP in Glucose-Grown Saccharomyces cerevisiae Cells
Genetics, November 1, 2003; 165(3): 961 - 974.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
M. Motz, G. Sagner, S. Paabo, and C. Kilger
Sequential DEXAS: a method for obtaining DNA sequences from genomic DNA and blood in one reaction
Nucleic Acids Res., October 15, 2003; 31(20): e121 - e121.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
A. J. Flavell, V. N. Bolshakov, A. Booth, R. Jing, J. Russell, T. H. N. Ellis, and P. Isaac
A microarray-based high throughput molecular marker genotyping method: the tagged microarray marker (TAM) approach
Nucleic Acids Res., October 1, 2003; 31(19): e115 - e115.
[Abstract] [Full Text] [PDF]


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J. Virol.Home page
L. H. Evans, M. Lavignon, M. Taylor, and A. S. M. Alamgir
Antigenic Subclasses of Polytropic Murine Leukemia Virus (MLV) Isolates Reflect Three Distinct Groups of Endogenous Polytropic MLV-Related Sequences in NFS/N Mice
J. Virol., October 1, 2003; 77(19): 10327 - 10338.
[Abstract] [Full Text] [PDF]


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Mol. Pathol.Home page
R Majumdar, M Al Jumah, and M Fraser
4193delC, a common mutation causing Wilson's disease in Saudi Arabia: rapid molecular screening of patients and carriers
Mol. Pathol., October 1, 2003; 56(5): 302 - 304.
[Abstract] [Full Text] [PDF]


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Genome ResHome page
A. J. Jeffreys and C. A. May
DNA Enrichment by Allele-Specific Hybridization (DEASH): A Novel Method for Haplotyping and for Detecting Low-Frequency Base Substitutional Variants and Recombinant DNA Molecules
Genome Res., October 1, 2003; 13(10): 2316 - 2324.
[Abstract] [Full Text] [PDF]


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Clin. Chem.Home page
S.-S. Wang, K. Thornton, A. M. Kuhn, J. G. Nadeau, and T. J. Hellyer
Homogeneous Real-Time Detection of Single-Nucleotide Polymorphisms by Strand Displacement Amplification on the BD ProbeTec ET System
Clin. Chem., October 1, 2003; 49(10): 1599 - 1607.
[Abstract] [Full Text] [PDF]


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Hum Mol GenetHome page
A.-M. Laurent, M. Li, S. Sherman, G. Roizes, and J. Buard
Recombination across the centromere of disjoined and non-disjoined chromosome 21
Hum. Mol. Genet., September 1, 2003; 12(17): 2229 - 2239.
[Abstract] [Full Text] [PDF]


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Rheumatology (Oxford)Home page
J. Martinez-Borra, S. Gonzalez, J. Santos-Juanes, J. Sanchez del Rio, J. C. Torre-Alonso, A. Lopez-Vazquez, M. A. Blanco-Gelaz, and C. Lopez-Larrea
Psoriasis vulgaris and psoriatic arthritis share a 100 kb susceptibility region telomeric to HLA-C
Rheumatology, September 1, 2003; 42(9): 1089 - 1092.
[Abstract] [Full Text] [PDF]


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Appl. Environ. Microbiol.Home page
P. A. Orlandi, L. Carter, A. M. Brinker, A. J. da Silva, D.-M. Chu, K. A. Lampel, and S. R. Monday
Targeting Single-Nucleotide Polymorphisms in the 18S rRNA Gene To Differentiate Cyclospora Species from Eimeria Species by Multiplex PCR
Appl. Envir. Microbiol., August 1, 2003; 69(8): 4806 - 4813.
[Abstract] [Full Text] [PDF]


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J. Clin. Microbiol.Home page
K. Korn, H. Reil, H. Walter, and B. Schmidt
Quality Control Trial for Human Immunodeficiency Virus Type 1 Drug Resistance Testing Using Clinical Samples Reveals Problems with Detecting Minority Species and Interpretation of Test Results
J. Clin. Microbiol., August 1, 2003; 41(8): 3559 - 3565.
[Abstract] [Full Text] [PDF]


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J. Clin. Microbiol.Home page
M. Weidmann, V. Rudaz, M. R. T. Nunes, P. F. C. Vasconcelos, and F. T. Hufert
Rapid Detection of Human Pathogenic Orthobunyaviruses
J. Clin. Microbiol., July 1, 2003; 41(7): 3299 - 3305.
[Abstract] [Full Text] [PDF]


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J. Bacteriol.Home page
D. Alland, T. S. Whittam, M. B. Murray, M. D. Cave, M. H. Hazbon, K. Dix, M. Kokoris, A. Duesterhoeft, J. A. Eisen, C. M. Fraser, et al.
Modeling Bacterial Evolution with Comparative-Genome-Based Marker Systems: Application to Mycobacterium tuberculosis Evolution and Pathogenesis
J. Bacteriol., June 1, 2003; 185(11): 3392 - 3399.
[Abstract] [Full Text] [PDF]


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J Clin PharmacolHome page
C. R. Yates, W. Zhang, P. Song, S. Li, A. O. Gaber, M. Kotb, M. R. Honaker, R. R. Alloway, and B. Meibohm
The Effect of CYP3A5 and MDR1 Polymorphic Expression on Cyclosporine Oral Disposition in Renal Transplant Patients
J. Clin. Pharmacol., June 1, 2003; 43(6): 555 - 564.
[Abstract] [Full Text] [PDF]


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Hum Mol GenetHome page
C. Bertoni, C. Lau, and T. A. Rando
Restoration of dystrophin expression in mdx muscle cells by chimeraplast-mediated exon skipping
Hum. Mol. Genet., May 15, 2003; 12(10): 1087 - 1099.
[Abstract] [Full Text] [PDF]


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Genome ResHome page
P. Cahill, M. Bakis, J. Hurley, V. Kamath, W. Nielsen, D. Weymouth, J. Dupuis, L. Doucette-Stamm, and D. R. Smith
Exo-Proofreading, A Versatile SNP Scoring Technology
Genome Res., May 1, 2003; 13(5): 925 - 931.
[Abstract] [Full Text] [PDF]


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J. Clin. Pathol.Home page
R Abraham, M Thomas, R Britt, C Fisher, and J Old
Hb Q-India: an uncommon variant diagnosed in three Punjabi patients with diabetes is identified by a novel DNA analysis test
J. Clin. Pathol., April 1, 2003; 56(4): 296 - 299.
[Abstract] [Full Text] [PDF]


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DevelopmentHome page
E. Shafizadeh, B. H. Paw, H. Foott, E. C. Liao, B. A. Barut, J. J. Cope, L. I. Zon, and S. Lin
Characterization of zebrafish merlot/chablis as non-mammalian vertebrate models for severe congenital anemia due to protein 4.1 deficiency
Development, March 11, 2003; 129(18): 4359 - 4370.
[Abstract] [Full Text] [PDF]


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J. Clin. Microbiol.Home page
X.-Y. Fan, Z.-Y. Hu, F.-H. Xu, Z.-Q. Yan, S.-Q. Guo, and Z.-M. Li
Rapid Detection of rpoB Gene Mutations in Rifampin-Resistant Mycobacterium tuberculosis Isolates in Shanghai by Using the Amplification Refractory Mutation System
J. Clin. Microbiol., March 1, 2003; 41(3): 993 - 997.
[Abstract] [Full Text] [PDF]


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J. Immunol.Home page
D. R. Johnson
Locus-Specific Constitutive and Cytokine-Induced HLA Class I Gene Expression
J. Immunol., February 15, 2003; 170(4): 1894 - 1902.
[Abstract] [Full Text] [PDF]


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Clin. Chem.Home page
C. Bengra, T. E. Mifflin, Y. Khripin, P. Manunta, S. M. Williams, P. A. Jose, and R. A. Felder
Genotyping of Essential Hypertension Single-Nucleotide Polymorphisms by a Homogeneous PCR Method with Universal Energy Transfer Primers
Clin. Chem., December 1, 2002; 48(12): 2131 - 2140.
[Abstract] [Full Text] [PDF]


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BrainHome page
F.-F. Wu, A. Ryan, J. Devaney, M. Warnstedt, Z. Korade-Mirnics, B. Poser, M. J. Escriva, E. Pegoraro, A. S. Yee, K. J. Felice, et al.
Novel CLCN1 mutations with unique clinical and electrophysiological consequences
Brain, November 1, 2002; 125(11): 2392 - 2407.
[Abstract] [Full Text] [PDF]


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Clin. Chem.Home page
F. Gemignani, C. Perra, S. Landi, F. Canzian, A. Kurg, N. Tonisson, R. Galanello, A. Cao, A. Metspalu, and G. Romeo
Reliable Detection of {beta}-Thalassemia and G6PD Mutations by a DNA Microarray
Clin. Chem., November 1, 2002; 48(11): 2051 - 2054.
[Full Text] [PDF]


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Nucleic Acids ResHome page
J. Tost, O. Brandt, F. Boussicault, D. Derbala, C. Caloustian, D. Lechner, and I. G. Gut
Molecular haplotyping at high throughput
Nucleic Acids Res., October 1, 2002; 30(19): e96 - e96.
[Abstract] [Full Text] [PDF]


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GeneticsHome page
R. Steinborn, P. Schinogl, D. N. Wells, A. Bergthaler, M. Muller, and G. Brem
Coexistence of Bos taurus and B. indicus Mitochondrial DNAs in Nuclear Transfer-Derived Somatic Cattle Clones
Genetics, October 1, 2002; 162(2): 823 - 829.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
D. O'Meara, A. Ahmadian, J. Odeberg, and J. Lundeberg
SNP typing by apyrase-mediated allele-specific primer extension on DNA microarrays
Nucleic Acids Res., August 1, 2002; 30(15): e75 - e75.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
Y. Eitan and Y. Kashi
Direct micro-haplotyping by multiple double PCR amplifications of specific alleles (MD-PASA)
Nucleic Acids Res., June 15, 2002; 30(12): e62 - e62.
[Abstract] [Full Text] [PDF]


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J. Clin. Endocrinol. Metab.Home page
L. Haddad, J. C. Evans, N. Gharani, C. Robertson, K. Rush, S. Wiltshire, T. M. Frayling, T. J. Wilkin, A. Demaine, A. Millward, et al.
Variation within the Type 2 Diabetes Susceptibility Gene Calpain-10 and Polycystic Ovary Syndrome
J. Clin. Endocrinol. Metab., June 1, 2002; 87(6): 2606 - 2610.
[Abstract] [Full Text] [PDF]


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Mol. Pathol.Home page
R K B Dang, R S Anthony, J I O Craig, R C F Leonard, and A C Parker
Limitations of the use of single base changes in the p53 gene to detect minimal residual disease of breast cancer
Mol. Pathol., June 1, 2002; 55(3): 177 - 181.
[Abstract] [Full Text] [PDF]


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J. Med. Genet.Home page
J S Waye, L M Nakamura, B Eng, L Hunnisett, D Chitayat, T Costa, and M J M Nowaczyk
Smith-Lemli-Opitz syndrome: carrier frequency and spectrum of DHCR7 mutations in Canada
J. Med. Genet., June 1, 2002; 39(6): e31 - 31.
[Full Text] [PDF]


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Clin. Chem.Home page
R. W.K. Chiu, T. K. Lau, P. T. Cheung, Z. Q. Gong, T. N. Leung, and Y.M. D. Lo
Noninvasive Prenatal Exclusion of Congenital Adrenal Hyperplasia by Maternal Plasma Analysis: A Feasibility Study
Clin. Chem., May 1, 2002; 48(5): 778 - 780.
[Full Text] [PDF]


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J Antimicrob ChemotherHome page
Y. Z. Qiang, T. Qin, W. Fu, W. P. Cheng, Y. S. Li, and G. Yi
Use of a rapid mismatch PCR method to detect gyrA and parC mutations in ciprofloxacin-resistant clinical isolates of Escherichia coli
J. Antimicrob. Chemother., March 1, 2002; 49(3): 549 - 552.
[Abstract] [Full Text] [PDF]


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J. Clin. Endocrinol. Metab.Home page
A. Meloni, R. Perniola, V. Faa, E. Corvaglia, A. Cao, and M. C. Rosatelli
Delineation of the Molecular Defects in the AIRE Gene in Autoimmune Polyendocrinopathy-Candidiasis-Ectodermal Dystrophy Patients from Southern Italy
J. Clin. Endocrinol. Metab., February 1, 2002; 87(2): 841 - 846.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
L. M. Wilhelmsson, B. Norden, K. Mukherjee, M. T. Dulay, and R. N. Zare
Genetic screening using the colour change of a PNA-DNA hybrid-binding cyanine dye
Nucleic Acids Res., January 15, 2002; 30(2): e3 - e3.
[Abstract] [Full Text] [PDF]


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Cancer Epidemiol. Biomarkers Prev.Home page
J. Chen, S. Germer, R. Higuchi, G. Berkowitz, J. Godbold, and J. G. Wetmur
Kinetic Polymerase Chain Reaction on Pooled DNA: A High-Throughput, High-Efficiency Alternative in Genetic Epidemiological Studies
Cancer Epidemiol. Biomarkers Prev., January 1, 2002; 11(1): 131 - 136.
[Abstract] [Full Text]


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Clin. Chem.Home page
L. L.M. Poon, T. N. Leung, T. K. Lau, K. C.K. Chow, and Y.M. D. Lo
Differential DNA Methylation between Fetus and Mother as a Strategy for Detecting Fetal DNA in Maternal Plasma
Clin. Chem., January 1, 2002; 48(1): 35 - 41.
[Abstract] [Full Text] [PDF]



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