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Nucleic Acids Research, 1975, Vol. 2, No. 3 319-326
© 1975


Articles

Determination of the 3' terminal nucleotide of DNA fragments

Kenneth Olson and Clifford Harvey

Chemical Research Department, Hoffmann-La Roche Inc. Nutley. New Jersey 07110, USA

Received December 13, 1974. A new method for determining the 3'-terminal nucleotide of a DNA strand is presented. Use is made of the fact that one (and only one) 2',3'-dideoxyribonucleotide can be added to the 3'-end of a DNA fragment with calf thymus terminal transferase. Addition of more than one nucleotide analog per strand is impossible due to the absence of a 3'-terminal hydroxyl group. If the terminating dideoxyribonucleotide contains an {alpha}32P] label, the resulting 3'-blocked strand can be digested by "nearest neighbor" techniques and the original 3'-endgroup determined. Picomole quantities of DNA strands can be labeled and the 3'-end determined.


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