Nucleic Acids Research, 1992, Vol. 20, No. 19 5137-5142
© 1992
MOLECULAR BIOLOGY |
DNA diversity among clinical isolates of Helicobacter pylori detected by PCR-based RAPD fingerprinting
Department of Molecular Microbiology, Campus Box 8230, Washington University Medical School St Louis, MO 63110, USA 1Division of Infectious Diseases and Immunology, St Louis University School of Medicine St Louis, MO 63104, USA 2Department of Biology, Washington University St Louis, MO 63130, USA
* To whom correspondence should be addressed
Received June 16, 1992. Revised September 1, 1992. Accepted September 1, 1992.
The RAPD (or AP-PCR) DNA fingerprinting method was used to distinguish among clinical isolates of Helicobacter pylori, a bacterium whose long term carriage is associated with gastritis, peptic ulcers and gastric carcinomas. This method uses arbitrarily chosen oligonucleotides to prime DNA synthesis from genomlc sites to which they are fortuitously matched, or almost matched. Most 10-nt primers with ss 60% G + C yielded strain-specific arrays of up to 15 prominent fragments, as did most longer (
17-nt) primers, whereas most 10-nt primers with 50% G + C did not. Each of 64 Independent H.pylori isolates, 60 of which were from patients in the same hospital, was distinguishable with a single RAPD primer, which suggests a high level of DNA sequence diversity within this species. In contrast, isolates from initial and followup biopsies were indistinguishable in each of three cases tested.
+ Permanent address: USDA-ARS Plant Genetic Resources Unit, Cornell University, Geneva, NY 14456-0462, USA
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K. J. Nolan, D. J. McGee, H. M. Mitchell, T. Kolesnikow, J. M. Harro, J. O'Rourke, J. E. Wilson, S. J. Danon, N. D. Moss, H. L. T. Mobley, et al. In Vivo Behavior of a Helicobacter pylori SS1 nixA Mutant with Reduced Urease Activity Infect. Immun., February 1, 2002; 70(2): 685 - 691. [Abstract] [Full Text] [PDF]
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T. Ando, R. M. Peek, D. Pride, S. M. Levine, T. Takata, Y.-C. Lee, K. Kusugami, A. van der Ende, E. J. Kuipers, J. G. Kusters, et al. Polymorphisms of Helicobacter pylori HP0638 Reflect Geographic Origin and Correlate with cagA Status J. Clin. Microbiol., January 1, 2002; 40(1): 239 - 246. [Abstract] [Full Text] [PDF]
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B. Bjorkholm, A. Lundin, A. Sillen, K. Guillemin, N. Salama, C. Rubio, J. I. Gordon, P. Falk, and L. Engstrand Comparison of Genetic Divergence and Fitness between Two Subclones of Helicobacter pylori Infect. Immun., December 1, 2001; 69(12): 7832 - 7838. [Abstract] [Full Text] [PDF]
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D. A. Israel, N. Salama, U. Krishna, U. M. Rieger, J. C. Atherton, S. Falkow, and R. M. Peek Jr. Helicobacter pylori genetic diversity within the gastric niche of a single human host PNAS, November 20, 2001; (2001) 251551698. [Abstract] [Full Text] [PDF]
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S. CHAKRABORTY, P. GARG, T. RAMAMURTHY, M. THUNGAPATHRA, J.K. GAUTAM, C. KUMAR, S. MAITI, S. YAMASAKI, T. SHIMADA, Y. TAKEDA, et al. Comparison of antibiogram, virulence genes, ribotypes and DNA fingerprints of Vibrio cholerae of matching serogroups isolated from hospitalised diarrhoea cases and from the environment during 1997-1998 in Calcutta, India J. Med. Microbiol., October 1, 2001; 50(10): 879 - 888. [Abstract] [Full Text] [PDF]
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A. K. Mukhopadhyay, S. Chakraborty, Y. Takeda, G. B. Nair, and D. E. Berg Characterization of VPI Pathogenicity Island and CTX{phi} Prophage in Environmental Strains of Vibrio cholerae J. Bacteriol., August 15, 2001; 183(16): 4737 - 4746. [Abstract] [Full Text] [PDF]
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A. D. Vinion-Dubiel, M. S. McClain, P. Cao, R. L. Mernaugh, and T. L. Cover Antigenic Diversity among Helicobacter pylori Vacuolating Toxins Infect. Immun., July 1, 2001; 69(7): 4329 - 4336. [Abstract] [Full Text] [PDF]
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N. Maggi Solca, M. V. Bernasconi, C. Valsangiacomo, L.-J. Van Doorn, and J.-C. Piffaretti Population genetics of Helicobacter pylori in the southern part of Switzerland analysed by sequencing of four housekeeping genes (atpD, glnA, scoB and recA), and by vacA, cagA, iceA and IS605 genotyping Microbiology, June 1, 2001; 147(6): 1693 - 1707. [Abstract] [Full Text] [PDF]
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A. A. R. Ashour, G. Birchal Collares, E. Nogueira Mendes, V. Ribeiro de Gusmão, D. M. d. M. Queiroz, P. Prazeres Magalhães, A. S. Teles de Carvalho, C. A. de Oliveira, A. M. M. Ferreira Nogueira, G. Aguiar Rocha, et al. iceA Genotypes of Helicobacter pylori Strains Isolated from Brazilian Children and Adults J. Clin. Microbiol., May 1, 2001; 39(5): 1746 - 1750. [Abstract] [Full Text]
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M. Kidd, J. C. Atherton, A. J. Lastovica, and J. A. Louw Clustering of South African Helicobacter pylori Isolates from Peptic Ulcer Disease Patients Is Demonstrated by Repetitive Extragenic Palindromic-PCR Fingerprinting J. Clin. Microbiol., May 1, 2001; 39(5): 1833 - 1839. [Abstract] [Full Text]
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D.C. OLD, P.B. CRICHTON, A. TAYLOR, and H. MATHER An attempt to identify the evolutionary origin of a novel serotype of Salmonella enterica isolated from harbour porpoises J. Med. Microbiol., May 1, 2001; 50(5): 415 - 420. [Abstract] [Full Text] [PDF]
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A. C. T. Carvalho, G. M. Ruiz-Palacios, P. Ramos-Cervantes, L.-E. Cervantes, X. Jiang, and L. K. Pickering Molecular Characterization of Invasive and Noninvasive Campylobacter jejuni and Campylobacter coli Isolates J. Clin. Microbiol., April 1, 2001; 39(4): 1353 - 1359. [Abstract] [Full Text]
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P. Figueroa-Arredondo, J. E. Heuser, N. S. Akopyants, J. H. Morisaki, S. Giono-Cerezo, F. Enriquez-Rincon, and D. E. Berg Cell Vacuolation Caused by Vibrio cholerae Hemolysin Infect. Immun., March 1, 2001; 69(3): 1613 - 1624. [Abstract] [Full Text] [PDF]
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A. Bart, Y. Pannekoek, J. Dankert, and A. van der Ende NmeSI Restriction-Modification System Identified by Representational Difference Analysis of a Hypervirulent Neisseria meningitidis Strain Infect. Immun., March 1, 2001; 69(3): 1816 - 1820. [Abstract] [Full Text] [PDF]
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D. T. Pride, R. J. Meinersmann, and M. J. Blaser Allelic Variation within Helicobacter pylori babA and babB Infect. Immun., February 1, 2001; 69(2): 1160 - 1171. [Abstract] [Full Text] [PDF]
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J. Vitkute, K. Stankevicius, G. Tamulaitiene, Z. Maneliene, A. Timinskas, D. E. Berg, and A. Janulaitis Specificities of Eleven Different DNA Methyltransferases of Helicobacter pylori Strain 26695 J. Bacteriol., January 15, 2001; 183(2): 443 - 450. [Abstract] [Full Text]
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D. Girlich, L. Poirel, A. Leelaporn, A. Karim, C. Tribuddharat, M. Fennewald, and P. Nordmann Molecular Epidemiology of the Integron-Located VEB-1 Extended-Spectrum {beta}-Lactamase in Nosocomial Enterobacterial Isolates in Bangkok, Thailand J. Clin. Microbiol., January 1, 2001; 39(1): 175 - 182. [Abstract] [Full Text]
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K. L. HOPKINS and A. C. HILTON Restriction endonuclease analysis of RAPD-PCR amplicons derived from Shiga-like toxin-producing Escherichia coli O157 isolates J. Med. Microbiol., January 1, 2001; 50(1): 90 - 95. [Abstract] [Full Text] [PDF]
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N. Yuki, T. Shimazaki, A. Kushiro, K. Watanabe, K. Uchida, T. Yuyama, and M. Morotomi Colonization of the Stratified Squamous Epithelium of the Nonsecreting Area of Horse Stomach by Lactobacilli Appl. Envir. Microbiol., November 1, 2000; 66(11): 5030 - 5034. [Abstract] [Full Text]
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E. M. Nielsen, J. Engberg, V. Fussing, L. Petersen, C.-H. Brogren, and S. L. W. On Evaluation of Phenotypic and Genotypic Methods for Subtyping Campylobacter jejuni Isolates from Humans, Poultry, and Cattle J. Clin. Microbiol., October 1, 2000; 38(10): 3800 - 3810. [Abstract] [Full Text]
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J.-Y. Jeong, A. K. Mukhopadhyay, D. Dailidiene, Y. Wang, B. Velapatiño, R. H. Gilman, A. J. Parkinson, G. B. Nair, B. C. Y. Wong, S. K. Lam, et al. Sequential Inactivation of rdxA (HP0954) and frxA (HP0642) Nitroreductase Genes Causes Moderate and High-Level Metronidazole Resistance in Helicobacter pylori J. Bacteriol., September 15, 2000; 182(18): 5082 - 5090. [Abstract] [Full Text]
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R. A. Alm, J. Bina, B. M. Andrews, P. Doig, R. E. W. Hancock, and T. J. Trust Comparative Genomics of Helicobacter pylori: Analysis of the Outer Membrane Protein Families Infect. Immun., July 1, 2000; 68(7): 4155 - 4168. [Abstract] [Full Text] [PDF]
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M. A. Roberts and D. L. Crawford Use of Randomly Amplified Polymorphic DNA as a Means of Developing Genus- and Strain-Specific Streptomyces DNA Probes Appl. Envir. Microbiol., June 1, 2000; 66(6): 2555 - 2564. [Abstract] [Full Text]
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W. K. Leung, R. S. Dassanayake, J. Y. Y. Yau, L. J. Jin, W. C. Yam, and L. P. Samaranayake Oral Colonization, Phenotypic, and Genotypic Profiles of Candida Species in Irradiated, Dentate, Xerostomic Nasopharyngeal Carcinoma Survivors J. Clin. Microbiol., June 1, 2000; 38(6): 2219 - 2226. [Abstract] [Full Text]
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D. Kersulyte, A. K. Mukhopadhyay, B. Velapatiño, W. Su, Z. Pan, C. Garcia, V. Hernandez, Y. Valdez, R. S. Mistry, R. H. Gilman, et al. Differences in Genotypes of Helicobacter pylori from Different Human Populations J. Bacteriol., June 1, 2000; 182(11): 3210 - 3218. [Abstract] [Full Text]
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A. K. Mukhopadhyay, D. Kersulyte, J.-Y. Jeong, S. Datta, Y. Ito, A. Chowdhury, S. Chowdhury, A. Santra, S. K. Bhattacharya, T. Azuma, et al. Distinctiveness of Genotypes of Helicobacter pylori in Calcutta, India J. Bacteriol., June 1, 2000; 182(11): 3219 - 3227. [Abstract] [Full Text]
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C. Burucoa, V. Lhomme, and J. L. Fauchere Performance Criteria of DNA Fingerprinting Methods for Typing of Helicobacter pylori Isolates: Experimental Results and Meta-Analysis J. Clin. Microbiol., December 1, 1999; 37(12): 4071 - 4080. [Abstract] [Full Text]
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J. Izard, W. A. Samsonoff, M. B. Kinoshita, and R. J. Limberger Genetic and Structural Analyses of Cytoplasmic Filaments of Wild-Type Treponema phagedenis and a Flagellar Filament-Deficient Mutant J. Bacteriol., November 1, 1999; 181(21): 6739 - 6746. [Abstract] [Full Text]
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S. Torriani, G. Zapparoli, and F. Dellaglio Use of PCR-Based Methods for Rapid Differentiation of Lactobacillus delbrueckii subsp. bulgaricus and L. delbrueckii subsp. lactis Appl. Envir. Microbiol., October 1, 1999; 65(10): 4351 - 4356. [Abstract] [Full Text]
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T. Ando, D. A. Israel, K. Kusugami, and M. J. Blaser HP0333, a Member of the dprA Family, Is Involved in Natural Transformation in Helicobacter pylori J. Bacteriol., September 15, 1999; 181(18): 5572 - 5580. [Abstract] [Full Text]
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M. Van Looveren, C. A. Ison, M. Ieven, P. Vandamme, I. M. Martin, K. Vermeulen, A. Renton, and H. Goossens Evaluation of the Discriminatory Power of Typing Methods for Neisseria gonorrhoeae J. Clin. Microbiol., July 1, 1999; 37(7): 2183 - 2188. [Abstract] [Full Text]
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D. M. Olive and P. Bean Principles and Applications of Methods for DNA-Based Typing of Microbial Organisms J. Clin. Microbiol., June 1, 1999; 37(6): 1661 - 1669. [Full Text]
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S. Miehlke, R. Thomas, O. Guiterrez, D. Y. Graham, and M. F. Go DNA Fingerprinting of Single Colonies of Helicobacter pylori from Gastric Cancer Patients Suggests Infection with a Single Predominant Strain J. Clin. Microbiol., January 1, 1999; 37(1): 245 - 247. [Abstract] [Full Text]
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