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Nucleic Acids Research, 1992, Vol. 20, No. 21 5687-5690
© 1992


METHODS

Oligonucleotide probes detect splicing variants in situ in Drosophila embryos

Rubén D. Artero, Michael Akaml and Manuel Pérez-Alonso

Department of Genetics, University of Valencia, Campus of Burjasot E-46100 Burjasot, Spain 1Wellcome/CRC Institute of Cancer and Developmental Biology Tennis Court Road, Cambridge CB2 1QR, UK

Received July 23, 1992. Revised September 25, 1992. Accepted September 25, 1992.

We describe a method for the in situ detection of specific splicing variants. The method is based on the use of antisense oligonucleotides designed to span splice junctions labelled with digoxigenin by terminal transferase tailing. We find that the spatial patterns of Ubx splicing variants la and lla are similar in early embryos, but differ in late embryos. Variant IVa is only detected in the CNS (ps6) at stages 16 and 17. We also present evidence indicating that the first splicing event is cotranscriptional.


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