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Nucleic Acids Research, 1992, Vol. 20, No. 22 5937-5941
© 1992


MOLECULAR BIOLOGY

Mutagenesis analysis of the self-cleavage domain of hepatitis delta virus antigenomic RNA

Huey-Nan Wu and Zhi-Shun Huang

Institute of Molecular Biology, Academia Sinica Nankang, Taipei, Taiwan 11529, Republic of China

Received September 4, 1992. Revised October 26, 1992. Accepted October 26, 1992.

To determine the sequence requirements and structural features of the self-cleavage domain of hepatitis delta virus (HDV) antigenomic RNA, we constructed a series of mutants and measured the rate constant of the cleavage reaction for each. The self-cleavage activity of HDV RNA of antigenomic sense was found to reside in a region of less than 90 nucleotides in length. The catalytic domain contained a long complementary sequence which could be deleted to half of its original size. Moreover, this region could be replaced by other sequences as long as they could fold into a stem-and-loop structure. The catalytic domain also required a 6-basepair helix adjacent to the cleaving point for activity. The structural features of these two basepairing regions are quite similar to those of the HDV genomic self-cleavage domain. The cleavage site as well as the the hinge region (the sequence between the two stems) requires specific sequences for activity.


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