Nucleic Acids Research, 1992, Vol. 20, No. 5 961-974
© 1992
SURVEY AND SUMMARY |
Compilation and analysis of DNA sequences associated with apparent streptomycete promoters
Department of Microbiology, The Ohio State University 484 West 12th Avenue, Columbus, OH 43210, USA
Received September 25, 1991. Revised January 31, 1992. Accepted January 31, 1992.
The DNA sequences associated with 139 apparent streptomycete transcriptional start sites are compiled and compared. Of these, 29 promoters appeared to belong to a group which are similar to those recognized by eubacterial RNA polymerases containing 
70-like subunits. The other 110 putative promoter regions contain a wide diversity of sequences; several of these promoters have obvious sequence similarities In the –10 and/or –35 regions. The apparent Shine-Dalgarno regions of 44 streptomycete genes are also examined and compared. These were found to have a wide range of degree of complementarity to the 3' end of streptomycete 16S rRNA. Eleven streptomycete genes are described and compared in which transcription and translation are proposed to be initiated from the same or nearby nucleotide. An updated consensus sequence for the E70-like promoters is proposed and a potential group of promoter sequences containing guanine-rtch –35 regions also Is identified.
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