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Nucleic Acids Research, 1994, Vol. 22, No. 17 3459-3461
© 1994

Articles

LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces

Reinhard Dölz, Marie-Odile Mossé1, Piotr P. Slonimski1, Amos Bairoch2 and Patrick Linder3,*

Biocomputing, Biozentrum, Klingelbergstr 70, 4056 Basel, Switzerland 1 Centre de Génétique Moléculaire, Laboratoire propre du CNRS associé à I'Université Pierre et Marie Curie F-91190 Gif sur Yvette, France 2 Departement de Biochimie Médicale, Centre Médicale Universitaire, 9 Ave Champel, 1211 Genève 4 3 department of Microbiology, Biozentrum Klingelbergstr 70, 4056 Basel, Switzerland

* To whom correspondence should be addressed

We continued our effort to make a comprehensive database (LISTA) for the yeast Saccharomyces cerevisiae. In this database each sequence has been attributed a single genetic name. In the case of duplicated sequences a simple method has been applied to distinguish between sequences of one and the same gene from non-allelic sequences of duplicated genes. If necessary, synonyms are given in the case of allelic duplicated sequences. Thus sequences can be found either by the name or by synonyms given in LISTA. Each entry contains the genetic name, the mnemonic from the EMBL data bank, the codon bias, reference of the publication of the sequence, Chromosomal location as far as known, Swissprot and EMBL accession numbers. To obtain more information on the included sequences, each entry has been screened against non-redundant nucleotide and protein data bank collections resulting in LISTA-HON and LISTA-HOP. The LISTA data base can be linked to the associated data sets or to nucleotide and protein banks by the Sequence Retrieval System (SRS).


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