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Nucleic Acids Research, 1994, Vol. 22, No. 17 3485-3487
© 1994


Articles

The Ribosomal Database project

Bonnie L. Maidak*, Niels Larsen, Michael J. McCaughey, Ross Overbeek1, Gary J. Olsen, Karl Fogel, James Blandy2 and Carl R. Woese

Department of Microbiology, University of Illinois 131 Burrill Hall, 407 South Goodwin Avenue, Urbana, IL 61801 1 Mathematics and Computer Science Division, Argonne National Laboratory Argonne, IL 60439 2 Department of Biology, Indiana University Jordan Hall 142, Bloomington, IN 47405, USA

* To whom correspondence should be addressed

The Ribosomal Database Project (RDP) is a curated database that offers ribosome-related data, analysis services, and associated computer programs. The offerings include phylogenetically ordered alignments of ribosomal RNA (rRNA) sequences, derived phylogenetic trees, rRNA secondary structure diagrams, and various software for handling, analyzing and displaying alignments and trees. The data are available via anonymous ftp (rdp.life.uiuc.edu), electronic mail (server@rdp.life.uiuc.edu) and gopher (rdpgopher.life.uiuc.edu). The electronic mail server also provides ribosomal probe checking, approximate phylogenetic placement of user-submitted sequences, screening for chimeric nature of newly sequenced rRNAs, and automated alignment.


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