Nucleic Acids Research, 1994, Vol. 22, No. 17 3508-3510
© 1994
Articles |
A comparative database of group I intron structures
MCD Biology, Campus Box 347, University of Colorado Boulder, CO 80309-0347, USA
* To whom correspondence should be addressed
We have created a database of comparatively derived group I intron secondary structure diagrams. This collection currently contains a broad sampling of phylogenetically and structurally similar and diverse structures from over 200 publicly available intron sequences. As more group I introns are sequenced and added to the database, we anticipate minor refinements in these secondary structure diagrams. These diagrams are directly accessible by computer as well as from the authors.
![]()
CiteULike
Connotea
Del.icio.us What's this?
This article has been cited by other articles:
![]() |
Z. J. Lu, D. H. Turner, and D. H. Mathews A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation Nucleic Acids Res., October 18, 2006; 34(17): 4912 - 4924. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. L. ADAMS, M. R. STAHLEY, M. L. GILL, A. B. KOSEK, J. WANG, and S. A. STROBEL Crystal structure of a group I intron splicing intermediate RNA, December 1, 2004; 10(12): 1867 - 1887. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. B. Lickey, K. W. Hughes, and R. H. Petersen Variability and Phylogenetic Incongruence of an SSU nrDNA Group I Intron in Artomyces, Auriscalpium, and Lentinellus (Auriscalpiaceae: Homobasidiomycetes) Mol. Biol. Evol., November 1, 2003; 20(11): 1909 - 1916. [Abstract] [Full Text] [PDF] |
||||
![]() |
G. C. Adams, R. S. Surve-Iyer, and A. F. Iezzoni Ribosomal DNA sequence divergence and group I introns within the Leucostoma species L. cinctum, L. persoonii, and L. parapersoonii sp. nov., ascomycetes that cause Cytospora canker of fruit trees Mycologia, November 1, 2002; 94(6): 947 - 967. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. A. Vepritskiy, I. A. Vitol, and S. A. Nierzwicki-Bauer Novel Group I Intron in the tRNALeu(UAA) Gene of a {gamma}-Proteobacterium Isolated from a Deep Subsurface Environment J. Bacteriol., March 1, 2002; 184(5): 1481 - 1487. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. P. Williams The tmRNA Website: invasion by an intron Nucleic Acids Res., January 1, 2002; 30(1): 179 - 182. [Abstract] [Full Text] [PDF] |
||||
![]() |
F. Li and D. L. Herrin FUGOID: functional genomics of organellar introns database Nucleic Acids Res., January 1, 2002; 30(1): 385 - 386. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. M. Muller, J. J. Cannone, R. R. Gutell, and R. G. Sheath A Structural and Phylogenetic Analysis of the Group IC1 Introns in the Order Bangiales (Rhodophyta) Mol. Biol. Evol., September 1, 2001; 18(9): 1654 - 1667. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Ding and C. E. Lawrence Statistical prediction of single-stranded regions in RNA secondary structure and application to predicting effective antisense target sites and beyond Nucleic Acids Res., March 1, 2001; 29(5): 1034 - 1046. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. A. Szewczak, L. Ortoleva-Donnelly, M. V. Zivarts, A. K. Oyelere, A. V. Kazantsev, and S. A. Strobel An important base triple anchors the substrate helix recognition surface within the Tetrahymena ribozyme active site PNAS, September 28, 1999; 96(20): 11183 - 11188. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. D. E. Everett, S. Kahane, R. M. Bush, and M. G. Friedman An Unspliced Group I Intron in 23S rRNA Links Chlamydiales, Chloroplasts, and Mitochondria J. Bacteriol., August 15, 1999; 181(16): 4734 - 4740. [Abstract] [Full Text] |
||||
![]() |
B. Paquin, A. Heinfling, and D. A. Shub Sporadic Distribution of tRNACCUArg Introns among alpha -Purple Bacteria: Evidence for Horizontal Transmission and Transposition of a Group I Intron J. Bacteriol., February 1, 1999; 181(3): 1049 - 1053. [Abstract] [Full Text] |
||||
![]() |
J. Roman and S. A. Woodson Integration of the Tetrahymena group I intron into bacterial rRNA by reverse splicing in vivo PNAS, March 3, 1998; 95(5): 2134 - 2139. [Abstract] [Full Text] [PDF] |
||||
![]() |
V. Derbyshire and M. Belfort Lightning strikes twice: Intron-intein coincidence PNAS, February 17, 1998; 95(4): 1356 - 1357. [Full Text] [PDF] |
||||
![]() |
S. A. Strobel and K. Shetty Defining the chemical groups essential for Tetrahymena group I intron function by nucleotide analog interference mapping PNAS, April 1, 1997; 94(7): 2903 - 2908. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. H. Cate, A. R. Gooding, E. Podell, K. Zhou, B. L. Golden, A. A. Szewczak, C. E. Kundrot, T. R. Cech, and J. A. Doudna RNA Tertiary Structure Mediation by Adenosine Platforms Science, September 20, 1996; 273(5282): 1696 - 1699. [Abstract] [Full Text] |
||||






