Nucleic Acids Research, 1994, Vol. 22, No. 17 3640-3659
© 1994
Articles |
Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases
California Institute of Biological Research 11099 North Torrey Pines Road, La Jolla, CA 92037 1 Megabase Research Products 4129 Holdrege, Lincoln, NE 68503, USA 2 Universitat Bonn Kirschallee 1, D-53115 Bonn, Germany
* To whom correspondence should be addressed
Restriction endonucleases have site-specific interactions with DNA that can often be inhibited by site-specific DNA methylation and other site-specific DNA modifications. However, such inhibition cannot generally be predicted. The empirically acquired data on these effects are tabulated for over 320 restriction endonucleases. In addition, a table of known sitespecific DNA modification methyltransferases and their specificities is presented along with EMBL database accession numbers for cloned genes.
![]()
CiteULike
Connotea
Del.icio.us What's this?
This article has been cited by other articles:
![]() |
M. Chen, M. Ha, E. Lackey, J. Wang, and Z. J. Chen RNAi of met1 Reduces DNA Methylation and Induces Genome-Specific Changes in Gene Expression and Centromeric Small RNA Accumulation in Arabidopsis Allopolyploids Genetics, April 1, 2008; 178(4): 1845 - 1858. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. Awano, C. Xu, H. Ke, K. Inoue, M. Inouye, and S. Phadtare Complementation Analysis of the Cold-Sensitive Phenotype of the Escherichia coli csdA Deletion Strain J. Bacteriol., August 15, 2007; 189(16): 5808 - 5815. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Boyko, P. Kathiria, F. J. Zemp, Y. Yao, I. Pogribny, and I. Kovalchuk Transgenerational changes in the genome stability and methylation in pathogen-infected plants: (Virus-induced plant genome instability) Nucleic Acids Res., March 12, 2007; 35(5): 1714 - 1725. [Abstract] [Full Text] [PDF] |
||||
![]() |
X. Xiang, L. Chen, X. Huang, Y. Luo, Q. She, and L. Huang Sulfolobus tengchongensis Spindle-Shaped Virus STSV1: Virus-Host Interactions and Genomic Features J. Virol., July 15, 2005; 79(14): 8677 - 8686. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Imamura, A. Kerjean, T. Heams, J.-J. Kupiec, C. Thenevin, and A. Paldi Dynamic CpG and Non-CpG Methylation of the Peg1/Mest Gene in the Mouse Oocyte and Preimplantation Embryo J. Biol. Chem., May 20, 2005; 280(20): 20171 - 20175. [Abstract] [Full Text] [PDF] |
||||
![]() |
F. Banine, C. Bartlett, R. Gunawardena, C. Muchardt, M. Yaniv, E. S. Knudsen, B. E. Weissman, and L. S. Sherman SWI/SNF Chromatin-Remodeling Factors Induce Changes in DNA Methylation to Promote Transcriptional Activation Cancer Res., May 1, 2005; 65(9): 3542 - 3547. [Abstract] [Full Text] [PDF] |
||||
![]() |
V. Chin, V. Valinluck, S. Magaki, and J. Ryu KpnBI is the prototype of a new family (IE) of bacterial type I restriction-modification system Nucleic Acids Res., October 8, 2004; 32(18): e138 - e138. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Wang, L. Tian, A. Madlung, H.-S. Lee, M. Chen, J. J. Lee, B. Watson, T. Kagochi, L. Comai, and Z. J. Chen Stochastic and Epigenetic Changes of Gene Expression in Arabidopsis Polyploids Genetics, August 1, 2004; 167(4): 1961 - 1973. [Abstract] [Full Text] [PDF] |
||||
![]() |
G. Lund, L. Andersson, M. Lauria, M. Lindholm, M. F. Fraga, A. Villar-Garea, E. Ballestar, M. Esteller, and S. Zaina DNA Methylation Polymorphisms Precede Any Histological Sign of Atherosclerosis in Mice Lacking Apolipoprotein E J. Biol. Chem., July 9, 2004; 279(28): 29147 - 29154. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Yildirim, W. Lin, A. D. Hitchins, L.-A. Jaykus, E. Altermann, T. R. Klaenhammer, and S. Kathariou Epidemic Clone I-Specific Genetic Markers in Strains of Listeria monocytogenes Serotype 4b from Foods Appl. Envir. Microbiol., July 1, 2004; 70(7): 4158 - 4164. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. K. A. Kasarjian, M. Hidaka, T. Horiuchi, M. Iida, and J. Ryu The recognition and modification sites for the bacterial type I restriction systems KpnAI, StySEAI, StySENI and StySGI Nucleic Acids Res., June 15, 2004; 32(10): e82 - e82. [Abstract] [Full Text] [PDF] |
||||
![]() |
M.J. Trappe Habitat and host associations of Craterellus tubaeformis in northwestern Oregon Mycologia, May 1, 2004; 96(3): 498 - 509. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. Duim, P. C. R. Godschalk, N. van den Braak, K. E. Dingle, J. R. Dijkstra, E. Leyde, J. van der Plas, F. M. Colles, H. P. Endtz, J. A. Wagenaar, et al. Molecular Evidence for Dissemination of Unique Campylobacter jejuni Clones in Curacao, Netherlands Antilles J. Clin. Microbiol., December 1, 2003; 41(12): 5593 - 5597. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. F. Staab, Y.-S. Bahn, and P. Sundstrom Integrative, multifunctional plasmids for hypha-specific or constitutive expression of green fluorescent protein in Candida albicans Microbiology, October 1, 2003; 149(10): 2977 - 2986. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. Detich, V. Bovenzi, and M. Szyf Valproate Induces Replication-independent Active DNA Demethylation J. Biol. Chem., July 18, 2003; 278(30): 27586 - 27592. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. J. Roberts, T. Vincze, J. Posfai, and D. Macelis REBASE: restriction enzymes and methyltransferases Nucleic Acids Res., January 1, 2003; 31(1): 418 - 420. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. Kapfhammer, J. Blass, S. Evers, and J. Reidl Vibrio cholerae Phage K139: Complete Genome Sequence and Comparative Genomics of Related Phages J. Bacteriol., December 1, 2002; 184(23): 6592 - 6601. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. King, I. P. Armstead, I. S. Donnison, H. M. Thomas, R. N. Jones, M. J. Kearsey, L. A. Roberts, A. Thomas, W. G. Morgan, and I. P. King Physical and Genetic Mapping in the Grasses Lolium perenne and Festuca pratensis Genetics, May 1, 2002; 161(1): 315 - 324. [Abstract] [Full Text] [PDF] |
||||
![]() |
H. Shaked, K. Kashkush, H. Ozkan, M. Feldman, and A. A. Levy Sequence Elimination and Cytosine Methylation Are Rapid and Reproducible Responses of the Genome to Wide Hybridization and Allopolyploidy in Wheat PLANT CELL, August 1, 2001; 13(8): 1749 - 1759. [Abstract] [Full Text] [PDF] |
||||
![]() |
I. Minko, S. Hattman, R. S. Lloyd, and V. Kossykh Methylation by a mutant T2 DNA [N6-adenine] methyltransferase expands the usage of RecA-assisted endonuclease (RARE) cleavage Nucleic Acids Res., April 1, 2001; 29(7): 1484 - 1490. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Vitkute, K. Stankevicius, G. Tamulaitiene, Z. Maneliene, A. Timinskas, D. E. Berg, and A. Janulaitis Specificities of Eleven Different DNA Methyltransferases of Helicobacter pylori Strain 26695 J. Bacteriol., January 15, 2001; 183(2): 443 - 450. [Abstract] [Full Text] |
||||
![]() |
S Adams, R Vinkenoog, M Spielman, H. Dickinson, and R. Scott Parent-of-origin effects on seed development in Arabidopsis thaliana require DNA methylation Development, January 6, 2000; 127(11): 2493 - 2502. [Abstract] [PDF] |
||||
![]() |
J. A. Jeddeloh, J. Bender, and E. J. Richards The DNA methylation locus DDM1 is required for maintenance of gene silencing in Arabidopsis Genes & Dev., June 1, 1998; 12(11): 1714 - 1725. [Abstract] [Full Text] |
||||
![]() |
F. van Leeuwen, E. R. Wijsman, R. Kieft, G. A. van der Marel, J. H. van Boom, and P. Borst Localization of the modified base J in telomeric VSG gene expression sites of Trypanosoma brucei Genes & Dev., December 1, 1997; 11(23): 3232 - 3241. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. K. Round, S. K. Flowers, and E. J. Richards Arabidopsis thaliana Centromere Regions: Genetic Map Positions and Repetitive DNA Structure Genome Res., November 1, 1997; 7(11): 1045 - 1053. [Abstract] [Full Text] [PDF] |
||||
![]() |
Z. J. Chen and C. S. Pikaard Epigenetic silencing of RNA polymerase I transcription: a role for DNA methylation and histone modification in nucleolar dominance Genes & Dev., August 15, 1997; 11(16): 2124 - 2136. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Rein, D. A. Natale, U. Gartner, M. Niggemann, M. L. DePamphilis, and H. Zorbas Absence of an Unusual "Densely Methylated Island" at the Hamster dhfr ori-beta J. Biol. Chem., April 11, 1997; 272(15): 10021 - 10029. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. Cervoni and M. Szyf Demethylase Activity Is Directed by Histone Acetylation J. Biol. Chem., October 26, 2001; 276(44): 40778 - 40787. [Abstract] [Full Text] [PDF] |
||||













