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Nucleic Acids Research, 1995, Vol. 23, No. 11 1923-1927
© 1995


MOLECULAR BIOLOGY

Site-specific cleavage of chromosomes in vitro through Cre-lox recombination

Minmin Qin, Elsa Lee, Todd Zankel and David W. Ow*

Plant Gene Expression Center, US Department of Agriculture 800 Buchanan Street, Albany, CA 94710, USA and Department of Plant Biology, University of California, Berkeley CA 94720, USA

* To whom correspondence should be addressed

Received February 21, 1995. Revised April 18, 1995. Accepted April 18, 1995.

Site-specific recombination systems are useful tools for chromosome engineering In vivo and site-specific DNA cleavage methods have applications in genome analysis and gene isolation. Here, we report a new method to fragment chromosomes In vitro using the Cre-lox site-specific recombination system. Two lox sites were targeted into the 5.7 Mb chromosome I of Schlzosaccharomyces pombe. In vitro recombination between chromosomal lox sites and exogenously provided lox ollgonucleotides ‘cleaved’ the chromosome at the defined lox sequences. Site-specific cleavage of lox sites in the tobacco genome was also demonstrated. This recombination-based cleavage method provides a novel approach for structural and functional analyses of eukaryotic chromosomes as it allows direct isolation of chromosome regions that correspond to phenotypes revealed through Cre-lox mediated chromosome rearrangements in vivo. Moreover, recombination with end-labeled lox ollgonucleotides would permit the specific end-labeling of chromosome segments to facilitate the long range mapping of chromosomes.


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S. Choi, D. Begum, H. Koshinsky, D. W. Ow, and R. A. Wing
A new approach for the identification and cloning of genes: the pBACwich system using Cre/lox site-specific recombination
Nucleic Acids Res., April 1, 2000; 28(7): e19 - e19.
[Abstract] [Full Text] [PDF]



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