Nucleic Acids Research, 1995, Vol. 23, No. 14 2715-2723
© 1995
MOLECULAR BIOLOGY |
Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions
Department of Biological Sciences, Stanford University Stanford, CA 94305-5020, USA
*To whom correspondence should be addressed
Received March 21, 1995. Accepted June 1, 1995.
The SNF2 family of proteins includes representatives from a variety of species with roles In cellular processes such as transcrlptional regulation (e.g. M0T1, SNF2 and BRM), maintenance of chromosome stability during mitosis (e.g. lodestar) and various aspects of processing of DNA damage, including nucleotide excision repair (e.g. RAD16 and ERCC6), recombinational pathways (e.g. RAD54) and post-replication daughter strand gap repair (e.g. RAD5). This family also includes many proteins with no known function. To better characterize this family of proteins we have used molecular phylogenetic techniques to infer evolutionary relationships among the family members. We have divided the SNF2 family Into multiple subfamilies, each of which represents what we propose to be a functionally and evolutionary distinct group. We have then used the subfamily structure to predict the functions of some of the uncharacterized proteins in the SNF2 family. We discuss possible implications of this evolutionary analysis on the general properties and evolution of the SNF2 family.
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T. J. Sarnowski, S. Swiezewski, K. Pawlikowska, S. Kaczanowski, and A. Jerzmanowski AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time Nucleic Acids Res., August 1, 2002; 30(15): 3412 - 3421. [Abstract] [Full Text] [PDF]
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L. Liu, S. Cheng, A. J. v. Brabant, and E. B. Kmiec Rad51p and Rad54p, but not Rad52p, elevate gene repair in Saccharomyces cerevisiae directed by modified single-stranded oligonucleotide vectors Nucleic Acids Res., July 1, 2002; 30(13): 2742 - 2750. [Abstract] [Full Text] [PDF]
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 N. Rouleau, A. Domans'kyi, M. Reeben, A.-M. Moilanen, K. Havas, Z. Kang, T. Owen-Hughes, J. J. Palvimo, and O. A. Janne Novel ATPase of SNF2-like Protein Family Interacts with Androgen Receptor and Modulates Androgen-dependent Transcription Mol. Biol. Cell, June 1, 2002; 13(6): 2106 - 2119. [Abstract] [Full Text] [PDF]
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H. R. Moinova, W.-D. Chen, L. Shen, D. Smiraglia, J. Olechnowicz, L. Ravi, L. Kasturi, L. Myeroff, C. Plass, R. Parsons, et al. HLTF gene silencing in human colon cancer PNAS, April 2, 2002; 99(7): 4562 - 4567. [Abstract] [Full Text] [PDF]
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K. Tanaka, W. Kagawa, T. Kinebuchi, H. Kurumizaka, and K. Miyagawa Human Rad54B is a double-stranded DNA-dependent ATPase and has biochemical properties different from its structural homolog in yeast, Tid1/Rdh54 Nucleic Acids Res., March 15, 2002; 30(6): 1346 - 1353. [Abstract] [Full Text] [PDF]
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G. Langst and P. B. Becker Nucleosome mobilization and positioning by ISWI-containing chromatin-remodeling factors J. Cell Sci., March 9, 2002; 114(14): 2561 - 2568. [Abstract] [Full Text] [PDF]
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M. V. Sukhodolets, J. E. Cabrera, H. Zhi, and D. J. Jin RapA, a bacterial homolog of SWI2/SNF2, stimulates RNA polymerase recycling in transcription Genes & Dev., December 15, 2001; 15(24): 3330 - 3341. [Abstract] [Full Text] [PDF]
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J. Tuo, M. Muftuoglu, C. Chen, P. Jaruga, R. R. Selzer, R. M. Brosh Jr., H. Rodriguez, M. Dizdaroglu, and V. A. Bohr The Cockayne Syndrome Group B Gene Product Is Involved in General Genome Base Excision Repair of 8-Hydroxyguanine in DNA J. Biol. Chem., November 30, 2001; 276(49): 45772 - 45779. [Abstract] [Full Text] [PDF]
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K. M. Vasquez, K. Marburger, Z. Intody, and J. H. Wilson Manipulating the mammalian genome by homologous recombination PNAS, July 17, 2001; 98(15): 8403 - 8410. [Abstract] [Full Text] [PDF]
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S. M. Gregory and K. S. Sweder Deletion of the CSB homolog, RAD26, yields Spt- strains with proficient transcription-coupled repair Nucleic Acids Res., July 15, 2001; 29(14): 3080 - 3086. [Abstract] [Full Text] [PDF]
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M. Bucheli, L. Lommel, and K. Sweder The Defect in Transcription-Coupled Repair Displayed by a Saccharomyces cerevisiae rad26 Mutant Is Dependent on Carbon Source and Is Not Associated With a Lack of Transcription Genetics, July 1, 2001; 158(3): 989 - 997. [Abstract] [Full Text] [PDF]
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H.-B. Wang and Y. Zhang Mi2, an auto-antigen for dermatomyositis, is an ATP-dependent nucleosome remodeling factor Nucleic Acids Res., June 15, 2001; 29(12): 2517 - 2521. [Abstract] [Full Text] [PDF]
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