Nucleic Acids Research, Vol 24, Issue 22 4420-4449, Copyright © 1996 by Oxford University Press
R Himmelreich, H Hilbert, H Plagens, E Pirkl, BC Li and R Herrmann
The entire genome of the bacterium Mycoplasma pneumoniae M129 has been
sequenced. It has a size of 816,394 base pairs with an average G+C content
of 40.0 mol%. We predict 677 open reading frames (ORFs) and 39 genes coding
for various RNA species. Of the predicted ORFs, 75.9% showed significant
similarity to genes/proteins of other organisms while only 9.9% did not
reveal any significant similarity to gene sequences in databases. This
permitted us tentatively to assign a functional classification to a large
number of ORFs and to deduce the biochemical and physiological properties
of this bacterium. The reduction of the genome size of M. pneumoniae during
its reductive evolution from ancestral bacteria can be explained by the
loss of complete anabolic (e.g. no amino acid synthesis) and metabolic
pathways. Therefore, M. pneumoniae depends in nature on an obligate
parasitic lifestyle which requires the provision of exogenous essential
metabolites. All the major classes of cellular processes and metabolic
pathways are briefly described. For a number of activities/functions
present in M. pneumoniae according to experimental evidence, the
corresponding genes could not be identified by similarity search. For
instance we failed to identify genes/proteins involved in motility,
chemotaxis and management of oxidative stress.
ARTICLES
Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae
Zentrum fur Molekulare Biologie Heidelberg, Mikrobiologie, Universitat Heidelberg, Germany.
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J. Westberg, A. Persson, A. Holmberg, A. Goesmann, J. Lundeberg, K.-E. Johansson, B. Pettersson, and M. Uhlen The Genome Sequence of Mycoplasma mycoides subsp. mycoides SC Type Strain PG1T, the Causative Agent of Contagious Bovine Pleuropneumonia (CBPP) Genome Res., February 1, 2004; 14(2): 221 - 227. [Abstract] [Full Text] [PDF]
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A. Barre, A. de Daruvar, and A. Blanchard MolliGen, a database dedicated to the comparative genomics of Mollicutes Nucleic Acids Res., January 1, 2004; 32(90001): D307 - 310. [Abstract] [Full Text] [PDF]
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S. Melamed, E. Tanne, R. Ben-Haim, O. Edelbaum, D. Yogev, and I. Sela Identification and Characterization of Phytoplasmal Genes, Employing a Novel Method of Isolating Phytoplasmal Genomic DNA J. Bacteriol., November 15, 2003; 185(22): 6513 - 6521. [Abstract] [Full Text] [PDF]
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C. Claudel-Renard, C. Chevalet, T. Faraut, and D. Kahn Enzyme-specific profiles for genome annotation: PRIAM Nucleic Acids Res., November 15, 2003; 31(22): 6633 - 6639. [Abstract] [Full Text] [PDF]
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J. Weiner III, C.-U. Zimmerman, H. W. H. Gohlmann, and R. Herrmann Transcription profiles of the bacterium Mycoplasma pneumoniae grown at different temperatures Nucleic Acids Res., November 1, 2003; 31(21): 6306 - 6320. [Abstract] [Full Text] [PDF]
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L. Papazisi, T. S. Gorton, G. Kutish, P. F. Markham, G. F. Browning, D. K. Nguyen, S. Swartzell, A. Madan, G. Mahairas, and S. J. Geary The complete genome sequence of the avian pathogen Mycoplasma gallisepticum strain Rlow Microbiology, September 1, 2003; 149(9): 2307 - 2316. [Abstract] [Full Text] [PDF]
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A. Andre, W. Maccheroni, F. Doignon, M. Garnier, and J. Renaudin Glucose and trehalose PTS permeases of Spiroplasma citri probably share a single IIA domain, enabling the spiroplasma to adapt quickly to carbohydrate changes in its environment Microbiology, September 1, 2003; 149(9): 2687 - 2696. [Abstract] [Full Text] [PDF]
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S.-i. Miyata, K. Oshima, S. Kakizawa, H. Nishigawa, H.-Y. Jung, T. Kuboyama, M. Ugaki, and S. Namba Two different thymidylate kinase gene homologues, including one that has catalytic activity, are encoded in the onion yellows phytoplasma genome Microbiology, August 1, 2003; 149(8): 2243 - 2250. [Abstract] [Full Text] [PDF]
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J. L. England, B. E. Shakhnovich, and E. I. Shakhnovich Natural selection of more designable folds: A mechanism for thermophilic adaptation PNAS, July 22, 2003; 100(15): 8727 - 8731. [Abstract] [Full Text] [PDF]
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A. F. Alice, G. Perez-Martinez, and C. Sanchez-Rivas Phosphoenolpyruvate phosphotransferase system and N-acetylglucosamine metabolism in Bacillus sphaericus Microbiology, July 1, 2003; 149(7): 1687 - 1698. [Abstract] [Full Text] [PDF]
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C. Streten and K. S. Gibb Identification of genes in the tomato big bud phytoplasma and comparison to those in sweet potato little leaf-V4 phytoplasma Microbiology, July 1, 2003; 149(7): 1797 - 1805. [Abstract] [Full Text] [PDF]
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L. M. Berent and J. B. Messick Physical Map and Genome Sequencing Survey of Mycoplasma haemofelis (Haemobartonella felis) Infect. Immun., June 1, 2003; 71(6): 3657 - 3662. [Abstract] [Full Text] [PDF]
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A. Mogk, C. Schlieker, C. Strub, W. Rist, J. Weibezahn, and B. Bukau Roles of Individual Domains and Conserved Motifs of the AAA+ Chaperone ClpB in Oligomerization, ATP Hydrolysis, and Chaperone Activity J. Biol. Chem., May 9, 2003; 278(20): 17615 - 17624. [Abstract] [Full Text] [PDF]
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M. J. Martin, J. Herrero, A. Mateos, and J. Dopazo Comparing Bacterial Genomes Through Conservation Profiles Genome Res., May 1, 2003; 13(5): 991 - 998. [Abstract] [Full Text] [PDF]
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S. P. Djordjevic, E. M. Vilei, and J. Frey Characterization of a chromosomal region of Mycoplasma sp. bovine group 7 strain PG50 encoding a glycerol transport locus (gtsABC) Microbiology, January 1, 2003; 149(1): 195 - 204. [Abstract] [Full Text] [PDF]
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M. J. Calcutt, M. S. Lewis, and K. S. Wise Molecular Genetic Analysis of ICEF, an Integrative Conjugal Element That Is Present as a Repetitive Sequence in the Chromosome of Mycoplasma fermentans PG18 J. Bacteriol., December 15, 2002; 184(24): 6929 - 6941. [Abstract] [Full Text] [PDF]
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Y. Sasaki, J. Ishikawa, A. Yamashita, K. Oshima, T. Kenri, K. Furuya, C. Yoshino, A. Horino, T. Shiba, T. Sasaki, et al. The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humans Nucleic Acids Res., December 1, 2002; 30(23): 5293 - 5300. [Abstract] [Full Text] [PDF]
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S. Pereyre, P. Gonzalez, B. de Barbeyrac, A. Darnige, H. Renaudin, A. Charron, S. Raherison, C. Bebear, and C. M. Bebear Mutations in 23S rRNA Account for Intrinsic Resistance to Macrolides in Mycoplasma hominis and Mycoplasma fermentans and for Acquired Resistance to Macrolides in M. hominis Antimicrob. Agents Chemother., October 1, 2002; 46(10): 3142 - 3150. [Abstract] [Full Text] [PDF]
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C. M. M. Cordova, C. Lartigue, P. Sirand-Pugnet, J. Renaudin, R. A. F. Cunha, and A. Blanchard Identification of the Origin of Replication of the Mycoplasma pulmonis Chromosome and Its Use in oriC Replicative Plasmids J. Bacteriol., October 1, 2002; 184(19): 5426 - 5435. [Abstract] [Full Text] [PDF]
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K. Steinhauer, T. Jepp, W. Hillen, and J. Stulke A novel mode of control of Mycoplasma pneumoniae HPr kinase/phosphatase activity reflects its parasitic lifestyle Microbiology, October 1, 2002; 148(10): 3277 - 3284. [Abstract] [Full Text] [PDF]
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E. T. Baldwin, M. S. Harris, A. W. Yem, C. L. Wolfe, A. F. Vosters, K. A. Curry, R. W. Murray, J. H. Bock, V. P. Marshall, J. I. Cialdella, et al. Crystal Structure of Type II Peptide Deformylase from Staphylococcus aureus J. Biol. Chem., August 16, 2002; 277(34): 31163 - 31171. [Abstract] [Full Text] [PDF]
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