Nucleic Acids Research, Vol 25, Issue 1 109-111, Copyright © 1997 by Oxford University Press
BL Maidak, GJ Olsen, N Larsen, R Overbeek, MJ McCaughey and CR Woese
The Ribosomal Database Project (RDP) is a curated database that offers
ribosome-related data, analysis services and associated computer programs.
The offerings include phylogenetically ordered alignments of ribosomal RNA
(rRNA) sequences, derived phylogenetic trees, rRNA secondary structure
diagrams, and various software for handling, analyzing and displaying
alignments and trees. The data are available via anonymous FTP
(rdp.life.uiuc.edu), electronic mail (server@rdp.life.uiuc.edu), gopher
(rdpgopher.life.uiuc.edu) and WWW (http://rdpwww.life.uiuc.edu/ ). The
electronic mail and WWW servers provide ribosomal probe checking,
approximate phylogenetic placement of user-submitted sequences, screening
for possible chimeric rRNA sequences, automated alignment, and a suggested
placement of an unknown sequence on an existing phylogenetic tree.
ARTICLES
The RDP (Ribosomal Database Project)
Department of Microbiology, University of Illinois, B103 C&LSL, 601 South Goodwin Avenue, Urbana, IL 61801, USA. b-maidak@uiuc.edu
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