Skip Navigation

This Article
Right arrow Full Text Freely available
Right arrow Print PDF (30K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (137)
Right arrowRequest Permissions
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Mewes, H. W.
Right arrow Articles by Pfeiffer, F.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Mewes, H. W.
Right arrow Articles by Pfeiffer, F.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, Vol 25, Issue 1 28-30, Copyright © 1997 by Oxford University Press

ARTICLES

MIPS: a database for protein sequences, homology data and yeast genome information

HW Mewes, K Albermann, K Heumann, S Liebl and F Pfeiffer
MIPS, Max-Planck-Institut fur Biochemie, Am Klopferspitz 18, D-82152 Martinsried, Germany. mewes@mips.biochem.mpg.de

The MIPS group (Martinsried Institute for Protein Sequences) at the Max- Planck-Institute for Biochemistry, Martinsried near Munich, Germany, collects, processes and distributes protein sequence data within the framework of the tripartite association of the PIR-International Protein Sequence Database (,). MIPS contributes nearly 50% of the data input to the PIR-International Protein Sequence Database. The database is distributed on CD-ROM together with PATCHX, an exhaustive supplement of unique, unverified protein sequences from external sources compiled by MIPS. Through its WWW server (http://www.mips.biochem.mpg.de/ ) MIPS permits internet access to sequence databases, homology data and to yeast genome information. (i) Sequence similarity results from the FASTA program () are stored in the FASTA database for all proteins from PIR-International and PATCHX. The database is dynamically maintained and permits instant access to FASTA results. (ii) Starting with FASTA database queries, proteins have been classified into families and superfamilies (PROT-FAM). (iii) The HPT (hashed position tree) data structure () developed at MIPS is a new approach for rapid sequence and pattern searching. (iv) MIPS provides access to the sequence and annotation of the complete yeast genome (), the functional classification of yeast genes (FunCat) and its graphical display, the 'Genome Browser' (). A CD-ROM based on the JAVA programming language providing dynamic interactive access to the yeast genome and the related protein sequences has been compiled and is available on request.
Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Appl. Environ. Microbiol.Home page
L. A. Hazelwood, M. C. Walsh, M. A. H. Luttik, P. Daran-Lapujade, J. T. Pronk, and J.-M. Daran
Identity of the Growth-Limiting Nutrient Strongly Affects Storage Carbohydrate Accumulation in Anaerobic Chemostat Cultures of Saccharomyces cerevisiae
Appl. Envir. Microbiol., November 1, 2009; 75(21): 6876 - 6885.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
T. A. Knijnenburg, L. F. A. Wessels, M. J. T. Reinders, and I. Shmulevich
Fewer permutations, more accurate P-values
Bioinformatics, June 15, 2009; 25(12): i161 - i168.
[Abstract] [Full Text] [PDF]

Home page
 Appl. Environ. Microbiol.Home page
D. A. Abbott, E. Suir, A. J. A. van Maris, and J. T. Pronk
Physiological and Transcriptional Responses to High Concentrations of Lactic Acid in Anaerobic Chemostat Cultures of Saccharomyces cerevisiae
Appl. Envir. Microbiol., September 15, 2008; 74(18): 5759 - 5768.
[Abstract] [Full Text] [PDF]

Home page
 Brief BioinformHome page
I. Koch and G. Fuellen
A review of bioinformatics education in Germany
Brief Bioinform, May 1, 2008; 9(3): 232 - 242.
[Abstract] [Full Text] [PDF]

Home page
 Appl. Environ. Microbiol.Home page
R. De Nicola, L. A. Hazelwood, E. A. F. De Hulster, M. C. Walsh, T. A. Knijnenburg, M. J. T. Reinders, G. M. Walker, J. T. Pronk, J.-M. Daran, and P. Daran-Lapujade
Physiological and Transcriptional Responses of Saccharomyces cerevisiae to Zinc Limitation in Chemostat Cultures
Appl. Envir. Microbiol., December 1, 2007; 73(23): 7680 - 7692.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
D. L. Eastmond and H. C. M. Nelson
Genome-wide Analysis Reveals New Roles for the Activation Domains of the Saccharomyces cerevisiae Heat Shock Transcription Factor (Hsf1) during the Transient Heat Shock Response
J. Biol. Chem., October 27, 2006; 281(43): 32909 - 32921.
[Abstract] [Full Text] [PDF]

Home page
 Genome ResHome page
K. Dolinski and D. Botstein
Changing perspectives in yeast research nearly a decade after the genome sequence
Genome Res., December 1, 2005; 15(12): 1611 - 1619.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
N. Phadnis and J. D. Fry
Widespread Correlations Between Dominance and Homozygous Effects of Mutations: Implications for Theories of Dominance
Genetics, September 1, 2005; 171(1): 385 - 392.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
P. H. Lee and D. Lee
Modularized learning of genetic interaction networks from biological annotations and mRNA expression data
Bioinformatics, June 1, 2005; 21(11): 2739 - 2747.
[Abstract] [Full Text] [PDF]

Home page
 J BiochemHome page
N. Maltsev, E. M. Glass, G. Ovchinnikova, and Z. Gu
Molecular Mechanisms Involved in Robustness of Yeast Central Metabolism against Null Mutations
J. Biochem., February 1, 2005; 137(2): 177 - 187.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Biol. CellHome page
M. U. Keller-Seitz, U. Certa, C. Sengstag, F. E. Wurgler, M. Sun, and M. Fasullo
Transcriptional Response of Yeast to Aflatoxin B1: Recombinational Repair Involving RAD51 and RAD1
Mol. Biol. Cell, September 1, 2004; 15(9): 4321 - 4336.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. ProteomicsHome page
J. Graumann, L. A. Dunipace, J. H. Seol, W. H. McDonald, J. R. Yates III, B. J. Wold, and R. J. Deshaies
Applicability of Tandem Affinity Purification MudPIT to Pathway Proteomics in Yeast
Mol. Cell. Proteomics, March 1, 2004; 3(3): 226 - 237.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
H. Qin, H. H. S. Lu, W. B. Wu, and W.-H. Li
Evolution of the yeast protein interaction network
PNAS, October 28, 2003; 100(22): 12820 - 12824.
[Abstract] [Full Text] [PDF]

Home page
 Genome ResHome page
H. Mi, J. Vandergriff, M. Campbell, A. Narechania, W. Majoros, S. Lewis, P. D. Thomas, and M. Ashburner
Assessment of Genome-Wide Protein Function Classification for Drosophila melanogaster
Genome Res., September 1, 2003; 13(9): 2118 - 2128.
[Abstract] [Full Text] [PDF]

Home page
 Genome ResHome page
P. D. Thomas, M. J. Campbell, A. Kejariwal, H. Mi, B. Karlak, R. Daverman, K. Diemer, A. Muruganujan, and A. Narechania
PANTHER: A Library of Protein Families and Subfamilies Indexed by Function
Genome Res., September 1, 2003; 13(9): 2129 - 2141.
[Abstract] [Full Text] [PDF]

Home page
 Physiol. GenomicsHome page
H. Ressom, D. Wang, and P. Natarajan
Clustering gene expression data using adaptive double self-organizing map
Physiol Genomics, June 24, 2003; 14(1): 35 - 46.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
A. Lagorce, N. C. Hauser, D. Labourdette, C. Rodriguez, H. Martin-Yken, J. Arroyo, J. D. Hoheisel, and J. Francois
Genome-wide Analysis of the Response to Cell Wall Mutations in the Yeast Saccharomyces cerevisiae
J. Biol. Chem., May 23, 2003; 278(22): 20345 - 20357.
[Abstract] [Full Text] [PDF]

Home page
 Genome ResHome page
J. Forster, I. Famili, P. Fu, B. O. Palsson, and J. Nielsen
Genome-Scale Reconstruction of the Saccharomyces cerevisiae Metabolic Network
Genome Res., February 1, 2003; 13(2): 244 - 253.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
B. Pillai, J. Verma, A. Abraham, P. Francis, Y. Kumar, U. Tatu, S. K. Brahmachari, and P. P. Sadhale
Whole Genome Expression Profiles of Yeast RNA Polymerase II Core Subunit, Rpb4, in Stress and Nonstress Conditions
J. Biol. Chem., January 24, 2003; 278(5): 3339 - 3346.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
S. Sinha and M. Tompa
Discovery of novel transcription factor binding sites by statistical overrepresentation
Nucleic Acids Res., December 15, 2002; 30(24): 5549 - 5560.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
A. M. Deutschbauer, R. M. Williams, A. M. Chu, and R. W. Davis
Parallel phenotypic analysis of sporulation and postgermination growth in Saccharomycescerevisiae
PNAS, November 26, 2002; 99(24): 15530 - 15535.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
R. M. Williams, M. Primig, B. K. Washburn, E. A. Winzeler, M. Bellis, C. Sarrauste de Menthiere, R. W. Davis, and R. E. Esposito
The Ume6 regulon coordinates metabolic and meiotic gene expression in yeast
PNAS, October 15, 2002; 99(21): 13431 - 13436.
[Abstract] [Full Text] [PDF]

Home page
 Genome ResHome page
G. Oshiro, L. M. Wodicka, M. P. Washburn, J. R. Yates III, D. J. Lockhart, and E. A. Winzeler
Parallel Identification of New Genes in Saccharomyces cerevisiae
Genome Res., August 1, 2002; 12(8): 1210 - 1220.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. Biol.Home page
P. Fortes, J. Kufel, M. Fornerod, M. Polycarpou-Schwarz, D. Lafontaine, D. Tollervey, and I. W. Mattaj
Genetic and Physical Interactions Involving the Yeast Nuclear Cap-Binding Complex
Mol. Cell. Biol., October 1, 1999; 19(10): 6543 - 6553.
[Abstract] [Full Text] [PDF]

Home page
 ScienceHome page
E. A. Winzeler, D. D. Shoemaker, A. Astromoff, H. Liang, K. Anderson, B. Andre, R. Bangham, R. Benito, J. D. Boeke, H. Bussey, et al.
Functional Characterization of the S. cerevisiae Genome by Gene Deletion and Parallel Analysis
Science, August 6, 1999; 285(5429): 901 - 906.
[Abstract] [Full Text]

Home page
 Mol. Biol. CellHome page
A. J. Kal, A. J. van Zonneveld, V. Benes, M. van den Berg, M. G. Koerkamp, K. Albermann, N. Strack, J. M. Ruijter, A. Richter, B. Dujon, et al.
Dynamics of Gene Expression Revealed by Comparison of Serial Analysis of Gene Expression Transcript Profiles from Yeast Grown on Two Different Carbon Sources
Mol. Biol. Cell, June 1, 1999; 10(6): 1859 - 1872.
[Abstract] [Full Text]

Home page
 Proc. Natl. Acad. Sci. USAHome page
S. A. Jelinsky and L. D. Samson
Global response of Saccharomyces cerevisiae to an alkylating agent
PNAS, February 16, 1999; 96(4): 1486 - 1491.
[Abstract] [Full Text] [PDF]

Home page
 J. Cell Sci.Home page
P Collas
Nuclear envelope disassembly in mitotic extract requires functional nuclear pores and a nuclear lamina
J. Cell Sci., January 5, 1998; 111(9): 1293 - 1303.
[Abstract] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.