Nucleic Acids Research, Vol 25, Issue 1 31-36, Copyright © 1997 by Oxford University Press
A Bairoch and R Apweiler
SWISS-PROT is a curated protein sequence database which strives to provide
a high level of annotations (such as the description of the function of a
protein, structure of its domains, post-translational modifications,
variants, etc.), a minimal level of redundancy and high level of
integration with other databases. Recent developments of the database
include: an increase in the number and scope of model organisms;
cross-references to two additional databases; a variety of new
documentation files and the creation of TrEMBL, a computer annotated
supplement to SWISS-PROT. This supplement consists of entries in
SWISS-PROT-like format derived from the translation of all coding sequences
(CDS) in the EMBL nucleotide sequence database, except the CDS already
included in SWISS-PROT.
ARTICLES
The SWISS-PROT protein sequence data bank and its supplement TrEMBL
Department of Medical Biochemistry, University of Geneva, 1 rue Michel Servet, 1211 Geneva 4, Switzerland. bairoch@cmu.unige.ch
![]()
CiteULike
Connotea
Del.icio.us What's this?
This article has been cited by other articles:
![]() |
H. K. Saini and D. Fischer FRalanyzer: a tool for functional analysis of fold-recognition sequence-structure alignments Nucleic Acids Res., July 13, 2007; 35(suppl_2): W499 - W502. [Abstract] [Full Text] [PDF] |
||||
![]() |
C.-M. Hecker, M. Rabiller, K. Haglund, P. Bayer, and I. Dikic Specification of SUMO1- and SUMO2-interacting Motifs J. Biol. Chem., June 9, 2006; 281(23): 16117 - 16127. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. A. Eyre, L. Partridge, and J. M. Thornton Computational analysis of {alpha}-helical membrane protein structure: implications for the prediction of 3D structural models Protein Eng. Des. Sel., August 1, 2004; 17(8): 613 - 624. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. Sorensen, M. Kussmann, A. Rosen, K. L. Bennett, D. d. G. Thrige, K. Uvebrant, B. Walse, P. Roepstorff, and P. Bjork Identification of Protein-Protein Interfaces Implicated in CD80-CD28 Costimulatory Signaling J. Immunol., June 1, 2004; 172(11): 6803 - 6809. [Abstract] [Full Text] [PDF] |
||||
![]() |
H. Scheel, S. Tomiuk, and K. Hofmann Elucidation of ataxin-3 and ataxin-7 function by integrative bioinformatics Hum. Mol. Genet., November 1, 2003; 12(21): 2845 - 2852. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. A. Oberg, J.-M. Ruysschaert, and E. Goormaghtigh Rationally selected basis proteins: A new approach to selecting proteins for spectroscopic secondary structure analysis Protein Sci., September 1, 2003; 12(9): 2015 - 2031. [Abstract] [Full Text] [PDF] |
||||
![]() |
K.-C. Chou and Y.-D. Cai Using Functional Domain Composition and Support Vector Machines for Prediction of Protein Subcellular Location J. Biol. Chem., November 22, 2002; 277(48): 45765 - 45769. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Jaramillo, L. Wernisch, S. Hery, and S. J. Wodak Folding free energy function selects native-like protein sequences in the core but not on the surface PNAS, October 15, 2002; 99(21): 13554 - 13559. [Abstract] [Full Text] [PDF] |
||||
![]() |
H. Scheel, S. Tomiuk, and K. Hofmann A common protein interaction domain links two recently identified epilepsy genes Hum. Mol. Genet., July 15, 2002; 11(15): 1757 - 1762. [Abstract] [Full Text] [PDF] |
||||
![]() |
V. S. Reddy, P. Natarajan, B. Okerberg, K. Li, K. V. Damodaran, R. T. Morton, C. L. Brooks III, and J. E. Johnson Virus Particle Explorer (VIPER), a Website for Virus Capsid Structures and Their Computational Analyses J. Virol., December 15, 2001; 75(24): 11943 - 11947. [Full Text] [PDF] |
||||
![]() |
N. Manoj and K. Suguna Signature of quaternary structure in the sequences of legume lectins Protein Eng. Des. Sel., October 1, 2001; 14(10): 735 - 745. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. H. Jonson and S. B. Petersen A critical view on conservative mutations Protein Eng. Des. Sel., June 1, 2001; 14(6): 397 - 402. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. Lindauer, T. Loerting, K. R. Liedl, and R. T. Kroemer Prediction of the structure of human Janus kinase 2 (JAK2) comprising the two carboxy-terminal domains reveals a mechanism for autoregulation Protein Eng. Des. Sel., January 1, 2001; 14(1): 27 - 37. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. S. Clark, P. Pontarotti, A. Gilles, A. Kelly, and G. Elgar Identification and Characterization of a {beta} Proteasome Subunit Cluster in the Japanese Pufferfish (Fugu rubripes) J. Immunol., October 15, 2000; 165(8): 4446 - 4452. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. M. Porcel, A.-N. Tran, M. Tammi, Z. Nyarady, M. Rydåker, T. P. Urmenyi, E. Rondinelli, U. Pettersson, B. Andersson, and L. Åslund Gene Survey of the Pathogenic Protozoan Trypanosoma cruzi Genome Res., August 1, 2000; 10(8): 1103 - 1107. [Abstract] [Full Text] |
||||
![]() |
A. V. Kajava, S. N. Zolov, A. E. Kalinin, and M. A. Nesmeyanova The Net Charge of the First 18 Residues of the Mature Sequence Affects Protein Translocation across the Cytoplasmic Membrane of Gram-Negative Bacteria J. Bacteriol., April 15, 2000; 182(8): 2163 - 2169. [Abstract] [Full Text] |
||||
![]() |
G. Elgar, M. S. Clark, S. Meek, S. Smith, S. Warner, Y. J.K. Edwards, N. Bouchireb, A. Cottage, G. S.H. Yeo, Y. Umrania, et al. Generation and Analysis of 25 Mb of Genomic DNA from the Pufferfish Fugu rubripes by Sequence Scanning Genome Res., October 1, 1999; 9(10): 960 - 971. [Abstract] [Full Text] |
||||
![]() |
R. O. Chen and R. B. Altman Automated Diagnosis of Data-Model Conflicts Using Metadata J. Am. Med. Inform. Assoc., September 1, 1999; 6(5): 374 - 392. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Kohzuma, T. Inoue, F. Yoshizaki, Y. Sasakawa, K. Onodera, S. Nagatomo, T. Kitagawa, S. Uzawa, Y. Isobe, Y. Sugimura, et al. The Structure and Unusual pH Dependence of Plastocyanin from the Fern Dryopteris crassirhizoma. THE PROTONATION OF AN ACTIVE SITE HISTIDINE IS HINDERED BY {pi}-{pi} INTERACTIONS J. Biol. Chem., April 23, 1999; 274(17): 11817 - 11823. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. Rost Twilight zone of protein sequence alignments Protein Eng. Des. Sel., February 1, 1999; 12(2): 85 - 94. [Abstract] [Full Text] [PDF] |
||||
![]() |
K.-C. Chou and D. W. Elrod Protein subcellular location prediction Protein Eng. Des. Sel., February 1, 1999; 12(2): 107 - 118. [Abstract] [Full Text] [PDF] |
||||
![]() |
H. Nielsen, S. Brunak, and G. von Heijne Machine learning approaches for the prediction of signal peptides and other protein sorting signals Protein Eng. Des. Sel., January 1, 1999; 12(1): 3 - 9. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. G. Nevill-Manning, T. D. Wu, and D. L. Brutlag Highly specific protein sequence motifs for genome analysis PNAS, May 26, 1998; 95(11): 5865 - 5871. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Duret, N. Guex, M. C. Peitsch, and A. Bairoch New Insulin-Like Proteins with Atypical Disulfide Bond Pattern Characterized in Caenorhabditis elegans by Comparative Sequence Analysis and Homology Modeling Genome Res., April 1, 1998; 8(4): 348 - 353. [Abstract] [Full Text] |
||||
![]() |
R. Agarwala, L. G. Biesecker, K. A. Hopkins, C. A. Francomano, and A. A. Schaffer Software for Constructing and Verifying Pedigrees within Large Genealogies and an Application to the Old Order Amish of Lancaster County Genome Res., March 1, 1998; 8(3): 211 - 221. [Abstract] [Full Text] |
||||
![]() |
A. Koch, T. Holstein, C Mala, E Kurz, J Engel, and C. David Spinalin, a new glycine- and histidine-rich protein in spines of Hydra nematocysts J. Cell Sci., January 6, 1998; 111(11): 1545 - 1554. [Abstract] [PDF] |
||||
![]() |
S. Scacco, R. Vergari, R. C. Scarpulla, Z. Technikova-Dobrova, A. Sardanelli, R. Lambo, V. Lorusso, and S. Papa cAMP-dependent Phosphorylation of the Nuclear Encoded 18-kDa (IP) Subunit of Respiratory Complex I and Activation of the Complex in Serum-starved Mouse Fibroblast Cultures J. Biol. Chem., June 2, 2000; 275(23): 17578 - 17582. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. M. Johnson and G. M. Church Predicting ligand-binding function in families of bacterial receptors PNAS, April 11, 2000; 97(8): 3965 - 3970. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. F. Smith, P. Snell, F. Gruetzner, A. J. Bench, T. Haaf, J. A. Metcalfe, A. R. Green, and G. Elgar Analyses of the Extent of Shared Synteny and Conserved Gene Orders between the Genome of Fugu rubripes and Human 20q Genome Res., May 1, 2002; 12(5): 776 - 784. [Abstract] [Full Text] [PDF] |
||||











