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Nucleic Acids Research, Vol 25, Issue 13 2681-2682, Copyright © 1997 by Oxford University Press


ARTICLES

Isolation of rare transcripts by representational difference analysis

MJ O'Neill and AH Sinclair
Department of Paediatrics and Centre for Hormone Research, The University of Melbourne, Royal Children's Hospital, Melbourne, Victoria 3052, Australia. oneill@cryptic.rch.unimelb.edu.au

Representational difference analysis (RDA) is a powerful technique for cloning the differences between genomes, and has recently been adapted for cloning differentially expressed genes. RDA, like other PCR-based differential screening methods, is prone to the production of false positives. We have identified a major source of false positives in RDA of cDNA and have introduced improvements which minimise their production. These modifications also significantly increase sensitivity, allowing for the isolation of rare differential transcripts from nanogram amounts of mRNA.
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