Nucleic Acids Research, Vol 25, Issue 21 4173-4180, Copyright © 1997 by Oxford University Press
TR Burglin
A new Caenorhabditis elegans homeobox gene, ceh-25, is described that
belongs to the TALE superclass of atypical homeodomains, which are
characterized by three extra residues between helix 1 and helix 2. ORF and
PCR analysis revealed a novel type of alternative splicing within the
homeobox. The alternative splicing occurs such that two different
homeodomains can be generated, which differ in their first 25 amino acids.
ceh-25 is an orthologue of the vertebrate Meis genes and it shares a new
conserved domain of 130 amino acids with them. A thorough analysis of all
TALE homeobox genes was performed and a new classification is presented.
Four TALE classes are identified in animals: PBC, MEIS, TGIF and IRO
(Iroquois); two types in fungi: the mating type genes (M-ATYP) and the CUP
genes; and two types in plants: KNOX and BEL. The IRO class has a new
conserved motif downstream of the homeodomain. For the KNOX class, a
conserved domain, the KNOX domain, was defined upstream of the homeodomain.
Comparison of the KNOX domain and the MEIS domain shows significant
sequence similarity revealing the existence of an archetypal group of
homeobox genes that encode two associated conserved domains. Thus TALE
homeobox genes were already present in the common ancestor of plants, fungi
and animals and represent a branch distinct from the typical homeobox
genes.
ARTICLES
Analysis of TALE superclass homeobox genes (MEIS, PBC, KNOX, Iroquois, TGIF) reveals a novel domain conserved between plants and animals
Department of Cell Biology, Biozentrum, University of Basel, Klingelbergstrasse 70, CH-4056 Basel, Switzerland.
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H. Nakagoshi, M. Hoshi, Y.-i. Nabeshima, and F. Matsuzaki A novel homeobox gene mediates the Dpp signal to establish functional specificity within target cells Genes & Dev., September 1, 1998; 12(17): 2724 - 2734. [Abstract] [Full Text] |
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L. J. Bischof, N. Kagawa, J. J. Moskow, Y. Takahashi, A. Iwamatsu, A. M. Buchberg, and M. R. Waterman Members of the Meis1 and Pbx Homeodomain Protein Families Cooperatively Bind a cAMP-responsive Sequence (CRS1) from Bovine CYP17 J. Biol. Chem., April 3, 1998; 273(14): 7941 - 7948. [Abstract] [Full Text] [PDF] |
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T. A. Melhuish and D. Wotton The Interaction of the Carboxyl Terminus-binding Protein with the Smad Corepressor TGIF Is Disrupted by a Holoprosencephaly Mutation in TGIF J. Biol. Chem., December 8, 2000; 275(50): 39762 - 39766. [Abstract] [Full Text] [PDF] |
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S. Herzig, L. Fuzesi, and W. Knepel Heterodimeric Pbx-Prep1 Homeodomain Protein Binding to the Glucagon Gene Restricting Transcription in a Cell Type-dependent Manner J. Biol. Chem., September 1, 2000; 275(36): 27989 - 27999. [Abstract] [Full Text] [PDF] |
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Y. Liu, R. J. MacDonald, and G. H. Swift DNA Binding and Transcriptional Activation by a PDX1{middle dot}PBX1b{middle dot}MEIS2b Trimer and Cooperation with a Pancreas-specific Basic Helix-Loop-Helix Complex J. Biol. Chem., May 18, 2001; 276(21): 17985 - 17993. [Abstract] [Full Text] [PDF] |
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Y. Wang, L. Yin, and F. B. Hillgartner The Homeodomain Proteins PBX and MEIS1 Are Accessory Factors That Enhance Thyroid Hormone Regulation of the Malic Enzyme Gene in Hepatocytes J. Biol. Chem., June 22, 2001; 276(26): 23838 - 23848. [Abstract] [Full Text] [PDF] |
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T. A. Melhuish, C. M. Gallo, and D. Wotton TGIF2 Interacts with Histone Deacetylase 1 and Represses Transcription J. Biol. Chem., August 17, 2001; 276(34): 32109 - 32114. [Abstract] [Full Text] [PDF] |
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Y. Yang, C. K. Hwang, U. M. D'Souza, S.-H. Lee, E. Junn, and M. M. Mouradian Three-amino acid Extension Loop Homeodomain Proteins Meis2 and TGIF Differentially Regulate Transcription J. Biol. Chem., June 30, 2000; 275(27): 20734 - 20741. [Abstract] [Full Text] [PDF] |
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D. Penkov, S. Tanaka, G. Di Rocco, J. Berthelsen, F. Blasi, and F. Ramirez Cooperative Interactions between PBX, PREP, and HOX Proteins Modulate the Activity of the alpha 2(V) Collagen (COL5A2) Promoter J. Biol. Chem., May 26, 2000; 275(22): 16681 - 16689. [Abstract] [Full Text] [PDF] |
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