Nucleic Acids Research, Vol 25, Issue 24 4876-4882, Copyright © 1997 by Oxford University Press
JD Thompson, TJ Gibson, F Plewniak, F Jeanmougin and DG Higgins
CLUSTAL X is a new windows interface for the widely-used progressive
multiple sequence alignment program CLUSTAL W. The new system is easy to
use, providing an integrated system for performing multiple sequence and
profile alignments and analysing the results. CLUSTAL X displays the
sequence alignment in a window on the screen. A versatile sequence
colouring scheme allows the user to highlight conserved features in the
alignment. Pull-down menus provide all the options required for traditional
multiple sequence and profile alignment. New features include: the ability
to cut-and-paste sequences to change the order of the alignment, selection
of a subset of the sequences to be realigned, and selection of a sub-range
of the alignment to be realigned and inserted back into the original
alignment. Alignment quality analysis can be performed and low-scoring
segments or exceptional residues can be highlighted. Quality analysis and
realignment of selected residue ranges provide the user with a powerful
tool to improve and refine difficult alignments and to trap errors in input
sequences. CLUSTAL X has been compiled on SUN Solaris, IRIX5.3 on Silicon
Graphics, Digital UNIX on DECstations, Microsoft Windows (32 bit) for PCs,
Linux ELF for x86 PCs, and Macintosh PowerMac.
ARTICLES
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
Institut de Genetique et de Biologie Moleculaire et Cellulaire (CNRS/INSERM/ULP), BP 163, 67404 Illkirch Cedex, France.
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  H. Al-Hello, A. Paananen, M. Eskelinen, P. Ylipaasto, T. Hovi, K. Salmela, A. N. Lukashev, S. Bobegamage, and M. Roivainen An enterovirus strain isolated from diabetic child belongs to a genetic subcluster of echovirus 11, but is also neutralised with monotypic antisera to coxsackievirus A9 J. Gen. Virol., August 1, 2008; 89(8): 1949 - 1959. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 N. Iritani, H. Vennema, J. J. Siebenga, R. J. Siezen, B. Renckens, Y. Seto, A. Kaida, and M. Koopmans Genetic Analysis of the Capsid Gene of Genotype GII.2 Noroviruses J. Virol., August 1, 2008; 82(15): 7336 - 7345. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. German-Retana, J. Walter, B. Doublet, G. Roudet-Tavert, V. Nicaise, C. Lecampion, M.-C. Houvenaghel, C. Robaglia, T. Michon, and O. Le Gall Mutational Analysis of Plant Cap-Binding Protein eIF4E Reveals Key Amino Acids Involved in Biochemical Functions and Potyvirus Infection J. Virol., August 1, 2008; 82(15): 7601 - 7612. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. B. Castro, L. D. Whittock, S. P. Whittock, G. Leggett, and A. Koutoulis DNA Sequence and Expression Variation of Hop (Humulus lupulus) Valerophenone Synthase (VPS), a Key Gene in Bitter Acid Biosynthesis Ann. Bot., August 1, 2008; 102(2): 265 - 273. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Ueda, T. Nishikawa, M. Fujimoto, H. Takanashi, S.-i. Arimura, N. Tsutsumi, and K.-i. Kadowaki Substitution of the Gene for Chloroplast RPS16 Was Assisted by Generation of a Dual Targeting Signal Mol. Biol. Evol., August 1, 2008; 25(8): 1566 - 1575. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Z. Xie, X. Li, B. J. Glover, S. Bai, G.-Y. Rao, J. Luo, and J. Yang Duplication and Functional Diversification of HAP3 Genes Leading to the Origin of the Seed-Developmental Regulatory Gene, LEAFY COTYLEDON1 (LEC1), in Nonseed Plant Genomes Mol. Biol. Evol., August 1, 2008; 25(8): 1581 - 1592. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
W. E. Grus and J. Zhang Distinct Evolutionary Patterns between Chemoreceptors of 2 Vertebrate Olfactory Systems and the Differential Tuning Hypothesis Mol. Biol. Evol., August 1, 2008; 25(8): 1593 - 1601. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. R. Coffin and N. O. Reich Modulation of Escherichia coli DNA Methyltransferase Activity by Biologically Derived GATC-flanking Sequences J. Biol. Chem., July 18, 2008; 283(29): 20106 - 20116. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. Troedsson, R. F. Lee, T. Walters, V. Stokes, K. Brinkley, V. Naegele, and M. E. Frischer Detection and Discovery of Crustacean Parasites in Blue Crabs (Callinectes sapidus) by Using 18S rRNA Gene-Targeted Denaturing High-Performance Liquid Chromatography Appl. Envir. Microbiol., July 15, 2008; 74(14): 4346 - 4353. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Handa, E. Mizohata, S. Kishishita, M. Toyama, S. Morita, T. Uchikubo-Kamo, R. Akasaka, K. Omori, J. Kotera, T. Terada, et al. Crystal Structure of the GAF-B Domain from Human Phosphodiesterase 10A Complexed with Its Ligand, cAMP J. Biol. Chem., July 11, 2008; 283(28): 19657 - 19664. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Michalski, H. Mohagheghi, M. Nimtz, J. Pasteels, and D. Ober Salicyl Alcohol Oxidase of the Chemical Defense Secretion of Two Chrysomelid Leaf Beetles: MOLECULAR AND FUNCTIONAL CHARACTERIZATION OF TWO NEW MEMBERS OF THE GLUCOSE-METHANOL-CHOLINE OXIDOREDUCTASE GENE FAMILY J. Biol. Chem., July 11, 2008; 283(28): 19219 - 19228. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. Tsukamoto, D. Potter, R. Tao, C. P. Vieira, J. Vieira, and A. F. Iezzoni Genetic and molecular characterization of three novel S-haplotypes in sour cherry (Prunus cerasus L.) J. Exp. Bot., July 9, 2008; (2008) ern172v1. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. Thawai, S. Tanasupawat, and T. Kudo Micromonospora pattaloongensis sp. nov., isolated from a Thai mangrove forest Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1516 - 1521. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
X. Wang, Y. Xue, S. Yuan, C. Zhou, and Y. Ma Salinicoccus halodurans sp. nov., a moderate halophile from saline soil in China Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1537 - 1541. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Yang, L.-P. Zhang, L.-G. Guo, N. Shi, Z. Lu, and X. Zhang Nocardiopsis valliformis sp. nov., an alkaliphilic actinomycete isolated from alkali lake soil in China Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1542 - 1546. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Cai, X.-Y. Zhi, S.-K. Tang, Y.-Q. Zhang, L.-H. Xu, and W.-J. Li Streptomonospora halophila sp. nov., a halophilic actinomycete isolated from a hypersaline soil Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1556 - 1560. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. B. Arun, P. Schumann, H.-I Chu, C.-C. Tan, W.-M. Chen, W.-A. Lai, P. Kampfer, F.-T. Shen, P. D. Rekha, M.-H. Hung, et al. Pseudoxanthobacter soli gen. nov., sp. nov., a nitrogen-fixing alphaproteobacterium isolated from soil Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1571 - 1575. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Vanlaere, J. J. LiPuma, A. Baldwin, D. Henry, E. De Brandt, E. Mahenthiralingam, D. Speert, C. Dowson, and P. Vandamme Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1580 - 1590. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Rameshkumar, Y. Fukui, T. Sawabe, and S. Nair Vibrio porteresiae sp. nov., a diazotrophic bacterium isolated from a mangrove-associated wild rice (Porteresia coarctata Tateoka) Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1608 - 1615. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. K. Kim, K. C. Lee, H.-M. Oh, and J.-S. Lee Microbacterium aquimaris sp. nov., isolated from seawater Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1616 - 1620. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Tanasupawat, S. Sukontasing, and J.-S. Lee Enterococcus thailandicus sp. nov., isolated from fermented sausage ('mum') in Thailand Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1630 - 1634. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. W. Roh, Z.-X. Quan, Y.-D. Nam, H.-W. Chang, K.-H. Kim, M.-K. Kim, W.-T. Im, L. Jin, S.-H. Kim, S.-T. Lee, et al. Pedobacter agri sp. nov., from soil Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1640 - 1643. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
I. Ara, A. Matsumoto, M. A. Bakir, T. Kudo, S. Omura, and Y. Takahashi Pseudosporangium ferrugineum gen. nov., sp. nov., a new member of the family Micromonosporaceae Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1644 - 1652. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
I. Ara, A. Matsumoto, M. A. Bakir, T. Kudo, S. Omura, and Y. Takahashi Actinomadura bangladeshensis sp. nov. and Actinomadura chokoriensis sp. nov. Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1653 - 1659. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Jit, M. Dadhwal, O. Prakash, and R. Lal Flavobacterium lindanitolerans sp. nov., isolated from hexachlorocyclohexane-contaminated soil Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1665 - 1669. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Iino, T. Nakagawa, K. Mori, S. Harayama, and K.-i. Suzuki Calditerrivibrio nitroreducens gen. nov., sp. nov., a thermophilic, nitrate-reducing bacterium isolated from a terrestrial hot spring in Japan Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1675 - 1679. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Kampfer, E. Falsen, and H.-J. Busse Naxibacter varians sp. nov. and Naxibacter haematophilus sp. nov., and emended description of the genus Naxibacter Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1680 - 1684. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Miyazaki, Y. Nogi, Y. Fujiwara, and K. Horikoshi Psychromonas japonica sp. nov., Psychromonas aquimarina sp. nov., Psychromonas macrocephali sp. nov. and Psychromonas ossibalaenae sp. nov., psychrotrophic bacteria isolated from sediment adjacent to sperm whale carcasses off Kagoshima, Japan Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1709 - 1714. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
V. Venkata Ramana, Ch. Sasikala, and Ch. V. Ramana Rhodobacter maris sp. nov., a phototrophic alphaproteobacterium isolated from a marine habitat of India Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1719 - 1722. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. A. Kumar, P. Aparna, T. N. R. Srinivas, Ch. Sasikala, and Ch. V. Ramana Rhodovulum kholense sp. nov. Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1723 - 1726. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Noonim, W. Mahakarnchanakul, J. Varga, J. C. Frisvad, and R. A. Samson Two novel species of Aspergillus section Nigri from Thai coffee beans Int J Syst Evol Microbiol, July 1, 2008; 58(7): 1727 - 1734. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Steyer, M. Poljsak-Prijatelj, D. Barlic-Maganja, and J. Marin Human, porcine and bovine rotaviruses in Slovenia: evidence of interspecies transmission and genome reassortment J. Gen. Virol., July 1, 2008; 89(7): 1690 - 1698. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. M. Codoner and S. F. Elena The promiscuous evolutionary history of the family Bromoviridae J. Gen. Virol., July 1, 2008; 89(7): 1739 - 1747. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
W. Ghazala, A. Waltermann, R. Pilot, S. Winter, and M. Varrelmann Functional characterization and subcellular localization of the 16K cysteine-rich suppressor of gene silencing protein of tobacco rattle virus J. Gen. Virol., July 1, 2008; 89(7): 1748 - 1758. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
W. S. Sserubombwe, R. W. Briddon, Y. K. Baguma, G. N. Ssemakula, S. E. Bull, A. Bua, T. Alicai, C. Omongo, G. W. Otim-Nape, and J. Stanley Diversity of begomoviruses associated with mosaic disease of cultivated cassava (Manihot esculenta Crantz) and its wild relative (Manihot glaziovii Mull. Arg.) in Uganda J. Gen. Virol., July 1, 2008; 89(7): 1759 - 1769. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. Tooming-Klunderud, B. Mikalsen, T. Kristensen, and K. S. Jakobsen The mosaic structure of the mcyABC operon in Microcystis Microbiology, July 1, 2008; 154(7): 1886 - 1899. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Palacios, J. Hui, P. L. Quan, A. Kalkstein, K. S. Honkavuori, A. V. Bussetti, S. Conlan, J. Evans, Y. P. Chen, D. vanEngelsdorp, et al. Genetic Analysis of Israel Acute Paralysis Virus: Distinct Clusters Are Circulating in the United States J. Virol., July 1, 2008; 82(13): 6209 - 6217. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. J. Clemente, P. C. Withers, G. Thompson, and D. Lloyd Why go bipedal? Locomotion and morphology in Australian agamid lizards J. Exp. Biol., July 1, 2008; 211(13): 2058 - 2065. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 Y. Quan, Z.-L. Ji, X. Wang, A. M. Tartakoff, and T. Tao Evolutionary and Transcriptional Analysis of Karyopherin {beta} Superfamily Proteins Mol. Cell. Proteomics, July 1, 2008; 7(7): 1254 - 1269. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Tian, L.-C. Luo, S. Ge, and Z.-Y. Zhang Clear Genetic Structure of Pinus kwangtungensis (Pinaceae) Revealed by a Plastid DNA Fragment with a Novel Minisatellite Ann. Bot., July 1, 2008; 102(1): 69 - 78. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. L. Zimmermann, E. A. King, E. Dengler, S. R. Scogin, and W. H. Powell An Aryl Hydrocarbon Receptor Repressor from Xenopus laevis: Function, Expression, and Role in Dioxin Responsiveness during Frog Development Toxicol. Sci., July 1, 2008; 104(1): 124 - 134. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 N. S. Struck, S. Herrmann, C. Langer, A. Krueger, B. J. Foth, K. Engelberg, A. L. Cabrera, S. Haase, M. Treeck, M. Marti, et al. Plasmodium falciparum possesses two GRASP proteins that are differentially targeted to the Golgi complex via a higher- and lower-eukaryote-like mechanism J. Cell Sci., July 1, 2008; 121(13): 2123 - 2129. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Claremont, D. G. Reid, and S. T. Williams A MOLECULAR PHYLOGENY OF THE RAPANINAE AND ERGALATAXINAE (NEOGASTROPODA: MURICIDAE) J. Mollus. Stud., June 24, 2008; (2008) eyn005v1. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. S. Steiger, A. E. Fidler, and B. Kempenaers Detection of Olfactory Receptor Transcripts in Bird Testes J. Hered., June 20, 2008; (2008) esn051v1. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Bauerschmitt, S. Funes, and J. M. Herrmann The Membrane-bound GTPase Guf1 Promotes Mitochondrial Protein Synthesis under Suboptimal Conditions J. Biol. Chem., June 20, 2008; 283(25): 17139 - 17146. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. O. Mendez, J. W. Neilson, and R. M. Maier Characterization of a Bacterial Community in an Abandoned Semiarid Lead-Zinc Mine Tailing Site Appl. Envir. Microbiol., June 15, 2008; 74(12): 3899 - 3907. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Greggio, I. Zambrano, A. Kaganovich, A. Beilina, J.-M. Taymans, V. Daniels, P. Lewis, S. Jain, J. Ding, A. Syed, et al. The Parkinson Disease-associated Leucine-rich Repeat Kinase 2 (LRRK2) Is a Dimer That Undergoes Intramolecular Autophosphorylation J. Biol. Chem., June 13, 2008; 283(24): 16906 - 16914. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Zhou, X. Luo, Y. Tang, L. Zhang, Q. Yang, Y. Qiu, and C. Fang Kocuria flava sp. nov. and Kocuria turfanensis sp. nov., airborne actinobacteria isolated from Xinjiang, China Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1304 - 1307. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. W. Lee, J. M. Lee, J. P. Seo, P. Schumann, S. J. Kim, and S. D. Lee Phycicola gilvus gen. nov., sp. nov., an actinobacterium isolated from living seaweed Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1318 - 1323. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Wiese, Y. Jiang, S.-K. Tang, V. Thiel, R. Schmaljohann, L.-H. Xu, C.-L. Jiang, and J. F. Imhoff A new member of the family Micromonosporaceae, Planosporangium flavigriseum gen. nov., sp. nov. Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1324 - 1331. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. K. Gupta, R. Kumari, O. Prakash, and R. Lal Pseudomonas panipatensis sp. nov., isolated from an oil-contaminated site Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1339 - 1345. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
W.-J. Li, Y.-Q. Zhang, P. Schumann, H.-Y. Liu, L.-Y. Yu, Y.-Q. Zhang, E. Stackebrandt, L.-H. Xu, and C.-L. Jiang Nesterenkonia halophila sp. nov., a moderately halophilic, alkalitolerant actinobacterium isolated from a saline soil Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1359 - 1363. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. N. R. Srinivas, P. Anil Kumar, Ch. Sasikala, C. Sproer, and Ch. V. Ramana Rhodobacter ovatus sp. nov., a phototrophic alphaproteobacterium isolated from a polluted pond Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1379 - 1383. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Z.-X. Quan, Y.-P. Xiao, S. W. Roh, Y.-D. Nam, H.-W. Chang, K.-S. Shin, S.-K. Rhee, Y.-H. Park, and J.-W. Bae Joostella marina gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the East Sea Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1388 - 1392. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Liu, H. Liu, H. Feng, X. Wang, C.-X. Zhang, K.-Y. Zhang, and R. Lai Pseudomonas duriflava sp. nov., isolated from a desert soil Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1404 - 1408. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Kampfer, A. Sessitsch, M. Schloter, B. Huber, H.-J. Busse, and H. C. Scholz Ochrobactrum rhizosphaerae sp. nov. and Ochrobactrum thiophenivorans sp. nov., isolated from the environment Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1426 - 1431. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Cai, W. Wei, R. E. Davis, H. Chen, and Y. Zhao Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1448 - 1457. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Liu, H. Liu, C.-X. Zhang, S.-Y. Yang, X.-H. Liu, K.-Y. Zhang, and R. Lai Sphingobacterium siyangense sp. nov., isolated from farm soil Int J Syst Evol Microbiol, June 1, 2008; 58(6): 1458 - 1462. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|