Nucleic Acids Research, Vol 26, Issue 1 362-367, Copyright © 1998 by Oxford University Press
T Heinemeyer, E Wingender, I Reuter, H Hermjakob, AE Kel, OV Kel, EV Ignatieva, EA Ananko, OA Podkolodnaya, FA Kolpakov, NL Podkolodny and NA Kolchanov
TRANSFAC, TRRD (Transcription Regulatory Region Database) and COMPEL are
databases which store information about transcriptional regulation in
eukaryotic cells. The three databases provide distinct views on the
components involved in transcription: transcription factors and their
binding sites and binding profiles (TRANSFAC), the regulatory hierarchy of
whole genes (TRRD), and the structural and functional properties of
composite elements (COMPEL). The quantitative and qualitative changes of
all three databases and connected programs are described. The databases are
accessible via WWW:http://transfac.gbf.de/TRANSFAC
orhttp://www.bionet.nsc.ru/TRRD
ARTICLES
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL
Gesellschaft fur Biotechnologische Forschung mbH, Mascheroder Weg 1, D- 38124 Braunschweig, Germany.
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|
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|
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|
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|
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|
|
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|
|
|
|
|
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|
|
|
|
 |
|
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|
|
|
|
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|
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|
|
|
|
|
|
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|
|
|
|
 |
|
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|
|
|
|
 |
|
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|
|
|
|
|
|
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|
|
|
|
 |
|
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|
|
|
|
 |
|
 D. W. Young, M. Q. Hassan, X.-Q. Yang, M. Galindo, A. Javed, S. K. Zaidi, P. Furcinitti, D. Lapointe, M. Montecino, J. B. Lian, et al. Mitotic retention of gene expression patterns by the cell fate-determining transcription factor Runx2 PNAS, February 27, 2007; 104(9): 3189 - 3194. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
 |
|
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|
|
|
|
 |
|
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|
|
|
|
|
|
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|
|
|
|
 |
|
 S. K. Das, W. S. Chu, T. C. Hale, X. Wang, R. L. Craig, H. Wang, A. R. Shuldiner, P. Froguel, P. Deloukas, M. I. McCarthy, et al. Polymorphisms in the Glucokinase-Associated, Dual-Specificity Phosphatase 12 (DUSP12) Gene Under Chromosome 1q21 Linkage Peak Are Associated With Type 2 Diabetes Diabetes, September 1, 2006; 55(9): 2631 - 2639. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
 |
|
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|
|
|
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|
|
|
|
 |
|
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|
|
|
|
|
|
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|
|
|
|
 |
|
 H. Matsuda, N. Fukuda, T. Ueno, Y. Tahira, H. Ayame, W. Zhang, T. Bando, H. Sugiyama, S. Saito, K. Matsumoto, et al. Development of Gene Silencing Pyrrole-Imidazole Polyamide Targeting the TGF-beta1 Promoter for Treatment of Progressive Renal Diseases J. Am. Soc. Nephrol., February 1, 2006; 17(2): 422 - 432. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
 |
|
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|
|
|
|
|
|
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|
|
|
|
 |
|
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|
|
|
|
 |
|
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|
|
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|
 |
|
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|
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|
|
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|
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 |
|
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|
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A. T. Bender, C. L. Ostenson, E. H. Wang, and J. A. Beavo Selective up-regulation of PDE1B2 upon monocyte-to-macrophage differentiation PNAS, January 11, 2005; 102(2): 497 - 502. [Abstract] [Full Text] [PDF]
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A. Srisodsai, R. Kurotani, Y. Chiba, F. Sheikh, H. A. Young, R. P. Donnelly, and S. Kimura Interleukin-10 Induces Uteroglobin-related Protein (UGRP) 1 Gene Expression in Lung Epithelial Cells through Homeodomain Transcription Factor T/EBP/NKX2.1 J. Biol. Chem., December 24, 2004; 279(52): 54358 - 54368. [Abstract] [Full Text] [PDF]
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M. P. Martin, M. M. Lederman, H. B. Hutcheson, J. J. Goedert, G. W. Nelson, Y. van Kooyk, R. Detels, S. Buchbinder, K. Hoots, D. Vlahov, et al. Association of DC-SIGN Promoter Polymorphism with Increased Risk for Parenteral, but Not Mucosal, Acquisition of Human Immunodeficiency Virus Type 1 Infection J. Virol., December 15, 2004; 78(24): 14053 - 14056. [Abstract] [Full Text] [PDF]
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N. Jinnai, T. Sakagami, T. Sekigawa, M. Kakihara, T. Nakajima, K. Yoshida, S. Goto, T. Hasegawa, T. Koshino, Y. Hasegawa, et al. Polymorphisms in the prostaglandin E2 receptor subtype 2 gene confer susceptibility to aspirin-intolerant asthma: a candidate gene approach Hum. Mol. Genet., December 15, 2004; 13(24): 3203 - 3217. [Abstract] [Full Text] [PDF]
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S. K. Das, W. Chu, Z. Zhang, S. J. Hasstedt, and S. C. Elbein Calsquestrin 1 (CASQ1) Gene Polymorphisms Under Chromosome 1q21 Linkage Peak Are Associated With Type 2 Diabetes in Northern European Caucasians Diabetes, December 1, 2004; 53(12): 3300 - 3306. [Abstract] [Full Text] [PDF]
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S. K. Kim, R. A. Albrecht, and D. J. O'Callaghan A Negative Regulatory Element (Base Pairs -204 to -177) of the EICP0 Promoter of Equine Herpesvirus 1 Abolishes the EICP0 Protein's trans-Activation of Its Own Promoter J. Virol., November 1, 2004; 78(21): 11696 - 11706. [Abstract] [Full Text] [PDF]
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E. A. Muller and D. J. Danner Tissue-specific Translation of Murine Branched-chain {alpha}-Ketoacid Dehydrogenase Kinase mRNA Is Dependent upon an Upstream Open Reading Frame in the 5'-Untranslated Region J. Biol. Chem., October 22, 2004; 279(43): 44645 - 44655. [Abstract] [Full Text] [PDF]
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K. M. Rose, M. Marin, S. L. Kozak, and D. Kabat Transcriptional Regulation of APOBEC3G, a Cytidine Deaminase That Hypermutates Human Immunodeficiency Virus J. Biol. Chem., October 1, 2004; 279(40): 41744 - 41749. [Abstract] [Full Text] [PDF]
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K. M. Lele and D. J. Wolgemuth Distinct Regions of the Mouse Cyclin A1 Gene, Ccna1, Confer Male Germ-Cell Specific Expression and Enhancer Function Biol Reprod, October 1, 2004; 71(4): 1340 - 1347. [Abstract] [Full Text] [PDF]
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N. Kanamoto, T. Akamizu, T. Tagami, Y. Hataya, K. Moriyama, K. Takaya, H. Hosoda, M. Kojima, K. Kangawa, and K. Nakao Genomic Structure and Characterization of the 5'-Flanking Region of the Human Ghrelin Gene Endocrinology, September 1, 2004; 145(9): 4144 - 4153. [Abstract] [Full Text] [PDF]
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H. Schjerven, T. N. Tran, P. Brandtzaeg, and F.-E. Johansen De Novo Synthesized RelB Mediates TNF-Induced Up-Regulation of the Human Polymeric Ig Receptor J. Immunol., August 1, 2004; 173(3): 1849 - 1857. [Abstract] [Full Text] [PDF]
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M. Markey, H. Siddiqui, and E. S. Knudsen Geminin Is Targeted for Repression by the Retinoblastoma Tumor Suppressor Pathway through Intragenic E2F Sites J. Biol. Chem., July 9, 2004; 279(28): 29255 - 29262. [Abstract] [Full Text] [PDF]
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L. He, F. A. Simmen, M. J. J. Ronis, and T. M. Badger Post-transcriptional Regulation of Sterol Regulatory Element-binding Protein-1 by Ethanol Induces Class I Alcohol Dehydrogenase in Rat Liver J. Biol. Chem., July 2, 2004; 279(27): 28113 - 28121. [Abstract] [Full Text] [PDF]
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 M. D. Dodon, Z. Li, S. Hamaia, and L. Gazzolo Tax protein of human T-cell leukaemia virus type 1 induces interleukin 17 gene expression in T cells J. Gen. Virol., July 1, 2004; 85(7): 1921 - 1932. [Abstract] [Full Text] [PDF]
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S. M. Myers and L. M. Mulligan The RET Receptor Is Linked to Stress Response Pathways Cancer Res., July 1, 2004; 64(13): 4453 - 4463. [Abstract] [Full Text] [PDF]
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K. A. Frazer, L. Pachter, A. Poliakov, E. M. Rubin, and I. Dubchak VISTA: computational tools for comparative genomics Nucleic Acids Res., July 1, 2004; 32(suppl_2): W273 - W279. [Abstract] [Full Text] [PDF]
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M. P. Hardy and L. A. J. O'Neill The Murine Irak2 Gene Encodes Four Alternatively Spliced Isoforms, Two of Which Are Inhibitory J. Biol. Chem., June 25, 2004; 279(26): 27699 - 27708. [Abstract] [Full Text] [PDF]
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K. Lan, D. A. Kuppers, S. C. Verma, and E. S. Robertson Kaposi's Sarcoma-Associated Herpesvirus-Encoded Latency-Associated Nuclear Antigen Inhibits Lytic Replication by Targeting Rta: a Potential Mechanism for Virus-Mediated Control of Latency J. Virol., June 15, 2004; 78(12): 6585 - 6594. [Abstract] [Full Text] [PDF]
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V. H. Black and L. C. Quattrochi MOLECULAR CLONING OF THE GUINEA PIG CYP1A2 GENE 5'-FLANKING REGION: IDENTIFICATION OF FUNCTIONAL AROMATIC HYDROCARBON RESPONSE ELEMENT AND CHARACTERIZATION OF CYP1A2 EXPRESSION IN GPC16 CELLS Drug Metab. Dispos., June 1, 2004; 32(6): 595 - 602. [Abstract] [Full Text] [PDF]
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 L. Jiang, J. Wang, R. S. Solorzano-Vargas, H. V. Tsai, E. M Gutierrez, L. O. Ontiveros, P. R. Kiela, S. V. Wu, and M. G. Martin Characterization of the rat intestinal Fc receptor (FcRn) promoter: transcriptional regulation of FcRn gene by the Sp family of transcription factors Am J Physiol Gastrointest Liver Physiol, June 1, 2004; 286(6): G922 - G931. [Abstract] [Full Text] [PDF]
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 D. Hum, S. Besnard, R. Sanchez, D. Devost, F. Gossard, P. Hamet, and J. Tremblay Characterization of a cGMP-Response Element in the Guanylyl Cyclase/Natriuretic Peptide Receptor A Gene Promoter Hypertension, June 1, 2004; 43(6): 1270 - 1278. [Abstract] [Full Text] [PDF]
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P. E. Lashmit, C. A. Lundquist, J. L. Meier, and M. F. Stinski Cellular Repressor Inhibits Human Cytomegalovirus Transcription from the UL127 Promoter J. Virol., May 15, 2004; 78(10): 5113 - 5123. [Abstract] [Full Text] [PDF]
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K.-Z. Dai, F.-E. Johansen, K. M. Kolltveit, H.-C. Aasheim, Z. Dembic, F. Vartdal, and A. Spurkland Transcriptional Activation of the SH2D2A Gene Is Dependent on a Cyclic Adenosine 5'-Monophosphate-Responsive Element in the Proximal SH2D2A Promoter J. Immunol., May 15, 2004; 172(10): 6144 - 6151. [Abstract] [Full Text] [PDF]
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 O. Moshynska, K. Sankaran, P. Pahwa, and A. Saxena Prognostic Significance of a Short Sequence Insertion in the MCL-1 Promoter in Chronic Lymphocytic Leukemia J Natl Cancer Inst, May 5, 2004; 96(9): 673 - 682. [Abstract] [Full Text] [PDF]
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M. J. Scobey, C. A. Fix, and W. H. Walker The Id2 Transcriptional Repressor Is Induced by Follicle-stimulating Hormone and cAMP J. Biol. Chem., April 16, 2004; 279(16): 16064 - 16070. [Abstract] [Full Text] [PDF]
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 E. Stenman and L. Edvinsson Cerebral Ischemia Enhances Vascular Angiotensin AT1 Receptor-Mediated Contraction in Rats Stroke, April 1, 2004; 35(4): 970 - 974. [Abstract] [Full Text] [PDF]
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