Skip Navigation

This Article
Right arrow Full Text Freely available
Right arrow Print PDF (129K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (42)
Right arrowRequest Permissions
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Karp, P. D.
Right arrow Articles by Krummenacker, M.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Karp, P. D.
Right arrow Articles by Krummenacker, M.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, Vol 26, Issue 1 50-53, Copyright © 1998 by Oxford University Press

ARTICLES

EcoCyc: Encyclopedia of Escherichia coli genes and metabolism

PD Karp, M Riley, SM Paley, A Pellegrini-Toole and M Krummenacker
Artificial Intelligence Center, SRI International, 333 Ravenswood Avenue, Menlo Park, CA 94025, USA. pkarp@pangeasystems.com

The encyclopedia of Escherichia coli genes and metabolism (EcoCyc) is a database that combines information about the genome and the intermediary metabolism of E.coli. The database describes 3030 genes of E.coli , 695 enzymes encoded by a subset of these genes, 595 metabolic reactions that occur in E.coli, and the organization of these reactions into 123 metabolic pathways. The EcoCyc graphical user interface allows scientists to query and explore the EcoCyc database using visualization tools such as genomic-map browsers and automatic layouts of metabolic pathways. EcoCyc can be thought of as an electronic review article because of its copious references to the primary literature, and as a (qualitative) computational model of E.coli metabolism. EcoCyc is available at URL http://ecocyc.PangeaSystems.com/ecocyc/
Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Plant Physiol.Home page
A. Masoudi-Nejad, S. Goto, R. Jauregui, M. Ito, S. Kawashima, Y. Moriya, T. R. Endo, and M. Kanehisa
EGENES: Transcriptome-Based Plant Database of Genes with Metabolic Pathway Information and Expressed Sequence Tag Indices in KEGG
Plant Physiology, June 1, 2007; 144(2): 857 - 866.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
M. Castellanos, D. B. Wilson, and M. L. Shuler
A modular minimal cell model: Purine and pyrimidine transport and metabolism
PNAS, April 27, 2004; 101(17): 6681 - 6686.
[Abstract] [Full Text] [PDF]

Home page
 Genome ResHome page
L. A. Nahum and M. Riley
Divergence of Function in Sequence-Related Groups of Escherichia coli Proteins
Genome Res., August 1, 2001; 11(8): 1375 - 1381.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
M. Pellegrini, E. M. Marcotte, M. J. Thompson, D. Eisenberg, and T. O. Yeates
Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
PNAS, April 13, 1999; 96(8): 4285 - 4288.
[Abstract] [Full Text] [PDF]

Home page
 Infect. Immun.Home page
M. McClelland and R. K. Wilson
Comparison of Sample Sequences of the Salmonella typhi Genome to the Sequence of the Complete Escherichia coli K-12 Genome
Infect. Immun., September 1, 1998; 66(9): 4305 - 4312.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.