Nucleic Acids Research, Vol 26, Issue 1 63-67, Copyright © 1998 by Oxford University Press
Y Nakamura, T Kaneko, M Hirosawa, N Miyajima and S Tabata
CyanoBase (http://www.kazusa.or.jp/cyano/) is a database containing genomic
information on the cyanobacterium Synechocystis sp. strain PCC6803. It
furnishes an annotation to each of the 3168 protein genes deduced from the
entire nucleotide sequence of this genome. Information on the genome can be
directly accessed through three different menus: a clickable physical map
of the genome, a gene classification list, and a keyword search menu, all
of which are accessible from the main page of the database. The entry page
for a gene annotation contains the following information: the location of
the gene on the genome, the nucleotide and deduced amino acid sequence of
the gene, the result of a similarity search, and the classification of the
deduced gene product according to its function. This page has reverse-links
to the local physical map and gene classification list so that relevant
genes can be searched in terms of their location on the genome and their
function. In addition, the main page of CyanoBase provides engines for
similarity searches between a query sequence and the entire genome sequence
and for keyword searches, in addition to numerous links to pages containing
related information.
ARTICLES
CyanoBase, a www database containing the complete nucleotide sequence of the genome of Synechocystis sp. strain PCC6803
Kazusa DNA Research Institute, 1532-3 Yana, Kisarazu, Chiba 292, Japan. ynakamu@kazusa.or.jp
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  K. M. Wegener, E. A. Welsh, L. E. Thornton, N. Keren, J. M. Jacobs, K. K. Hixson, M. E. Monroe, D. G. Camp II, R. D. Smith, and H. B. Pakrasi High Sensitivity Proteomics Assisted Discovery of a Novel Operon Involved in the Assembly of Photosystem II, a Membrane Protein Complex J. Biol. Chem., October 10, 2008; 283(41): 27829 - 27837. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Jeong, C. Cohu, L. Kerkeb, M. Pilon, E. L. Connolly, and M. L. Guerinot Chloroplast Fe(III) chelate reductase activity is essential for seedling viability under iron limiting conditions PNAS, July 29, 2008; 105(30): 10619 - 10624. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. Hishiya, W. Hatakeyama, Y. Mizota, N. Hosoya-Matsuda, K. Motohashi, M. Ikeuchi, and T. Hisabori Binary Reducing Equivalent Pathways Using NADPH-Thioredoxin Reductase and Ferredoxin-Thioredoxin Reductase in the Cyanobacterium Synechocystis sp. Strain PCC 6803 Plant Cell Physiol., January 1, 2008; 49(1): 11 - 18. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. Nakasugi, C. J. Svenson, and B. A. Neilan The competence gene, comF, from Synechocystis sp. strain PCC 6803 is involved in natural transformation, phototactic motility and piliation Microbiology, December 1, 2006; 152(12): 3623 - 3631. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Monshupanee, S. Fa-aroonsawat, and W. Chungjatupornchai A cyanobacterial strain with all chromosomal rRNA operons inactivated: a single nucleotide mutation of 23S rRNA confers temperature-sensitive phenotypes. Microbiology, May 1, 2006; 152(Pt 5): 1417 - 1425. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Hagiwara, M. Sugishima, Y. Takahashi, and K. Fukuyama From the Cover: Crystal structure of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin IX{alpha}, a key enzyme in the biosynthesis of phycocyanobilin PNAS, January 3, 2006; 103(1): 27 - 32. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Zhbanko, V. Zinchenko, M. Gutensohn, A. Schierhorn, and R. B. Klosgen Inactivation of a Predicted Leader Peptidase Prevents Photoautotrophic Growth of Synechocystis sp. Strain PCC 6803 J. Bacteriol., May 1, 2005; 187(9): 3071 - 3078. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Hosoya-Matsuda, K. Motohashi, H. Yoshimura, A. Nozaki, K. Inoue, M. Ohmori, and T. Hisabori Anti-oxidative Stress System in Cyanobacteria: SIGNIFICANCE OF TYPE II PEROXIREDOXIN AND THE ROLE OF 1-Cys PEROXIREDOXIN IN SYNECHOCYSTIS SP. STRAIN PCC 6803 J. Biol. Chem., January 7, 2005; 280(1): 840 - 846. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 N. Meguro, Y. Kodama, M.-T. Gallegos, and K. Watanabe Molecular Characterization of Resistance-Nodulation-Division Transporters from Solvent- and Drug-Resistant Bacteria in Petroleum-Contaminated Soil Appl. Envir. Microbiol., January 1, 2005; 71(1): 580 - 586. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Schneider, S. Berry, T. Volkmer, A. Seidler, and M. Rogner PetC1 Is the Major Rieske Iron-Sulfur Protein in the Cytochrome b6f Complex of Synechocystis sp. PCC 6803 J. Biol. Chem., September 17, 2004; 279(38): 39383 - 39388. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Prommeenate, A. M. Lennon, C. Markert, M. Hippler, and P. J. Nixon Subunit Composition of NDH-1 Complexes of Synechocystis sp. PCC 6803: IDENTIFICATION OF TWO NEW ndh GENE PRODUCTS WITH NUCLEAR-ENCODED HOMOLOGUES IN THE CHLOROPLAST Ndh COMPLEX J. Biol. Chem., July 2, 2004; 279(27): 28165 - 28173. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Cournac, G. Guedeney, G. Peltier, and P. M. Vignais Sustained Photoevolution of Molecular Hydrogen in a Mutant of Synechocystis sp. Strain PCC 6803 Deficient in the Type I NADPH-Dehydrogenase Complex J. Bacteriol., March 15, 2004; 186(6): 1737 - 1746. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
W.-H. Tong, G. N. L. Jameson, B. H. Huynh, and T. A. Rouault Subcellular compartmentalization of human Nfu, an iron-sulfur cluster scaffold protein, and its ability to assemble a [4Fe-4S] cluster PNAS, August 19, 2003; 100(17): 9762 - 9767. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. Morimoto, S. Sato, S. Tabata, and M. Nakai A HEAT-Repeats Containing Protein, IaiH, Stabilizes the Iron-Sulfur Cluster Bound to the Cyanobacterial IscA Homologue, IscA2 J. Biochem., August 1, 2003; 134(2): 211 - 217. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. G. Hashimoto, B. S. Stevenson, and T. M. Schmidt Rates and Consequences of Recombination between rRNA Operons J. Bacteriol., February 1, 2003; 185(3): 966 - 972. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. Kawabata, S. Fukuchi, K. Homma, M. Ota, J. Araki, T. Ito, N. Ichiyoshi, and K. Nishikawa GTOP: a database of protein structures predicted from genome sequences Nucleic Acids Res., January 1, 2002; 30(1): 294 - 298. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. J. Tooley, Y. A. Cai, and A. N. Glazer Biosynthesis of a fluorescent cyanobacterial C-phycocyanin holo-alpha subunit in a heterologous host PNAS, September 11, 2001; 98(19): 10560 - 10565. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. J. Thomas, J. Thomas, P. A. Youderian, and S. K. Herbert Photoinhibition and Light-Induced Cyclic Electron Transport in ndhB- and psaE- Mutants of Synechocystis sp. PCC 6803 Plant Cell Physiol., August 1, 2001; 42(8): 803 - 812. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. A. G. Ochoa de Alda and J. Houmard Genomic survey of cAMP and cGMP signalling components in the cyanobacterium Synechocystis PCC 6803 Microbiology, December 1, 2000; 146(12): 3183 - 3194. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. A. G. Ochoa de Alda, G. Ajlani, and J. Houmard Synechocystis Strain PCC 6803 cya2, a Prokaryotic Gene That Encodes a Guanylyl Cyclase J. Bacteriol., July 1, 2000; 182(13): 3839 - 3842. [Abstract] [Full Text]
|
|
|
|
|
|
E. Hoiczyk and A. Hansel Cyanobacterial Cell Walls: News from an Unusual Prokaryotic Envelope J. Bacteriol., March 1, 2000; 182(5): 1191 - 1199. [Full Text]
|
|
|
|
 |
|
 J. M. Dunwell, S. Khuri, and P. J. Gane Microbial Relatives of the Seed Storage Proteins of Higher Plants: Conservation of Structure and Diversification of Function during Evolution of the Cupin Superfamily Microbiol. Mol. Biol. Rev., March 1, 2000; 64(1): 153 - 179. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. C. Rivera, R. Jain, J. E. Moore, and J. A. Lake Genomic evidence for two functionally distinct gene classes PNAS, May 26, 1998; 95(11): 6239 - 6244. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Nishio and M. Nakai Transfer of Iron-Sulfur Cluster from NifU to Apoferredoxin J. Biol. Chem., July 21, 2000; 275(30): 22615 - 22618. [Abstract] [Full Text] [PDF]
|
|