Nucleic Acids Research, Vol 26, Issue 1 63-67, Copyright © 1998 by Oxford University Press
Y Nakamura, T Kaneko, M Hirosawa, N Miyajima and S Tabata
CyanoBase (http://www.kazusa.or.jp/cyano/) is a database containing genomic
information on the cyanobacterium Synechocystis sp. strain PCC6803. It
furnishes an annotation to each of the 3168 protein genes deduced from the
entire nucleotide sequence of this genome. Information on the genome can be
directly accessed through three different menus: a clickable physical map
of the genome, a gene classification list, and a keyword search menu, all
of which are accessible from the main page of the database. The entry page
for a gene annotation contains the following information: the location of
the gene on the genome, the nucleotide and deduced amino acid sequence of
the gene, the result of a similarity search, and the classification of the
deduced gene product according to its function. This page has reverse-links
to the local physical map and gene classification list so that relevant
genes can be searched in terms of their location on the genome and their
function. In addition, the main page of CyanoBase provides engines for
similarity searches between a query sequence and the entire genome sequence
and for keyword searches, in addition to numerous links to pages containing
related information.
ARTICLES
CyanoBase, a www database containing the complete nucleotide sequence of the genome of Synechocystis sp. strain PCC6803
Kazusa DNA Research Institute, 1532-3 Yana, Kisarazu, Chiba 292, Japan. ynakamu@kazusa.or.jp
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