Nucleic Acids Research, Vol 26, Issue 1 80-84, Copyright © 1998 by Oxford University Press
DJ Flanders, S Weng, FX Petel and JM Cherry
AtDB, the Arabidopsis thaliana Database, has a primary role to provide
public access to the collected genomic information for A. thaliana via the
World Wide Web (URL: http://genome-www.stanford. edu/ ). AtDB presents
interactive physical and genetics maps that are hyperlinked with detailed
information about the clones and markers placed on these maps. A large
literature collection on Arabidopsis , contact information on researchers
worldwide, laboratory method manuals and other information useful to plant
molecular biologists are also provided. This paper discusses the
database-driven clickable displays that provide easy navigation within a
variety of genomic maps, including those summarizing progress of the
international Arabidopsis genomic sequencing effort, AGI (the Arabidopsis
Genome Initiative). The interface uses client-side hyperlinked GIF-images
that direct the user to detailed database-information. A new BLAST service
is also described. This gives users access to the thousands of Arabidopsis
BAC clone end-sequences and includes hyperlinked images summarizing the
search results. The linking of genetic and physically mapped regions and
their sequence into information for loci within that region is an ongoing
goal for this project.
ARTICLES
AtDB, the Arabidopsis thaliana database, and graphical-web-display of progress by the Arabidopsis Genome Initiative
Department of Genetics, School of Medicine, Stanford University, Stanford, CA 94305-5120, USA.
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