Nucleic Acids Research, Vol 27, Issue 1 12-17, Copyright © 1999 by Oxford University Press
DA Benson, MS Boguski, DJ Lipman, J Ostell, BF Ouellette, BA Rapp and DL Wheeler
The GenBank (Registered Trademark symbol) sequence database incorporates
DNA sequences from all available public sources, primarily through the
direct submission of sequence data from individual laboratories and from
large-scale sequencing projects. Most submitters use the BankIt (Web) or
Sequin programs to format and send sequence data. Data exchange with the
EMBL Data Library and the DNA Data Bank of Japan helps ensure comprehensive
worldwide coverage. GenBank data is accessible through NCBI's integrated
retrieval system, Entrez, which integrates data from the major DNA and
protein sequence databases along with taxonomy, genome and protein
structure information. MEDLINE (Registered Trademark symbol) s from
published articles describing the sequences are included as an additional
source of biological annotation through the PubMed search system. Sequence
similarity searching is offered through the BLAST series of database search
programs. In addition to FTP, Email, and server/client versions of Entrez
and BLAST, NCBI offers a wide range of World Wide Web retrieval and
analysis services based on GenBank data. The GenBank database and related
resources are freely accessible via the URL: http://www.ncbi.nlm.nih.gov
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B. A. Moffatt, L. Wang, M. S. Allen, Y. Y. Stevens, W. Qin, J. Snider, and K. von Schwartzenberg Adenosine Kinase of Arabidopsis. Kinetic Properties and Gene Expression Plant Physiology, December 1, 2000; 124(4): 1775 - 1785. [Abstract] [Full Text]
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M. Burset, I. A. Seledtsov, and V. V. Solovyev Analysis of canonical and non-canonical splice sites in mammalian genomes Nucleic Acids Res., November 1, 2000; 28(21): 4364 - 4375. [Abstract] [Full Text] [PDF]
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T. M. LaPara, C. H. Nakatsu, L. Pantea, and J. E. Alleman Phylogenetic Analysis of Bacterial Communities in Mesophilic and Thermophilic Bioreactors Treating Pharmaceutical Wastewater Appl. Envir. Microbiol., September 1, 2000; 66(9): 3951 - 3959. [Abstract] [Full Text]
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I. S. Kohane Bioinformatics and Clinical Informatics: The Imperative to Collaborate J. Am. Med. Inform. Assoc., September 1, 2000; 7(5): 512 - 516. [Full Text]
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H. Kong, L.-F. Lin, N. Porter, S. Stickel, D. Byrd, J. Posfai, and R. J. Roberts Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome Nucleic Acids Res., September 1, 2000; 28(17): 3216 - 3223. [Abstract] [Full Text] [PDF]
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W. J. Kent and A. M. Zahler Conservation, Regulation, Synteny, and Introns in a Large-scale C. briggsae-C. elegans Genomic Alignment Genome Res., August 1, 2000; 10(8): 1115 - 1125. [Abstract] [Full Text]
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G. Ferbeyre, V. Bourdeau, M. Pageau, P. Miramontes, and R. Cedergren Distribution of Hammerhead and Hammerhead-like RNA Motifs Through the GenBank Genome Res., July 1, 2000; 10(7): 1011 - 1019. [Abstract] [Full Text]
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J. Aach, W. Rindone, and G. M. Church Systematic Management and Analysis of Yeast Gene Expression Data Genome Res., April 1, 2000; 10(4): 431 - 445. [Abstract] [Full Text]
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S. H. Bhuiyan, K. Gowda, H. Hotokezaka, and C. Zwieb Assembly of archaeal signal recognition particle from recombinant components Nucleic Acids Res., March 15, 2000; 28(6): 1365 - 1373. [Abstract] [Full Text] [PDF]
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J.E. Bray, A.E. Todd, F.M.G. Pearl, J.M. Thornton, and C.A. Orengo The CATH Dictionary of Homologous Superfamilies (DHS): a consensus approach for identifying distant structural homologues Protein Eng. Des. Sel., March 1, 2000; 13(3): 153 - 165. [Abstract] [Full Text] [PDF]
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 F. Barloy-Hubler, D. Capela, M. J. Barnett, S. Kalman, N. A. Federspiel, S. R. Long, and F. Galibert High-Resolution Physical Map of the Sinorhizobium meliloti 1021 pSyma Megaplasmid J. Bacteriol., February 15, 2000; 182(4): 1185 - 1189. [Abstract] [Full Text]
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M. S. Gelfand, E. V. Koonin, and A. A. Mironov Prediction of transcription regulatory sites in Archaea by a comparative genomic approach Nucleic Acids Res., February 1, 2000; 28(3): 695 - 705. [Abstract] [Full Text] [PDF]
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K. Rantakokko-Jalava, S. Nikkari, J. Jalava, E. Eerola, M. Skurnik, O. Meurman, O. Ruuskanen, A. Alanen, E. Kotilainen, P. Toivanen, et al. Direct Amplification of rRNA Genes in Diagnosis of Bacterial Infections J. Clin. Microbiol., January 1, 2000; 38(1): 32 - 39. [Abstract] [Full Text]
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C. Harger, G. Chen, A. Farmer, W. Huang, J. Inman, D. Kiphart, F. Schilkey, M. P. Skupski, and J. Weller The Genome Sequence DataBase Nucleic Acids Res., January 1, 2000; 28(1): 31 - 32. [Abstract] [Full Text] [PDF]
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G. Perriere, P. Bessieres, and B. Labedan EMGLib: the Enhanced Microbial Genomes Library (update 2000) Nucleic Acids Res., January 1, 2000; 28(1): 68 - 71. [Abstract] [Full Text] [PDF]
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C. A. Ball, K. Dolinski, S. S. Dwight, M. A. Harris, L. Issel-Tarver, A. Kasarskis, C. R. Scafe, G. Sherlock, G. Binkley, H. Jin, et al. Integrating functional genomic information into the Saccharomyces Genome Database Nucleic Acids Res., January 1, 2000; 28(1): 77 - 80. [Abstract] [Full Text] [PDF]
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A. Kumar, K.-H. Cheung, P. Ross-Macdonald, P. S. R. Coelho, P. Miller, and M. Snyder TRIPLES: a database of gene function in Saccharomyces cerevisiae Nucleic Acids Res., January 1, 2000; 28(1): 81 - 84. [Abstract] [Full Text] [PDF]
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W. J. Kent and A. M. Zahler The Intronerator: exploring introns and alternative splicing in Caenorhabditis elegans Nucleic Acids Res., January 1, 2000; 28(1): 91 - 93. [Abstract] [Full Text] [PDF]
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C. J. Palm, N. A. Federspiel, and R. W. Davis DAtA: Database of Arabidopsis thaliana Annotation Nucleic Acids Res., January 1, 2000; 28(1): 102 - 103. [Abstract] [Full Text] [PDF]
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J. A. Blake, J. T. Eppig, J. E. Richardson, M. T. Davisson, and the Mouse Genome Database Group The Mouse Genome Database (MGD): expanding genetic and genomic resources for the laboratory mouse Nucleic Acids Res., January 1, 2000; 28(1): 108 - 111. [Abstract] [Full Text] [PDF]
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M. Ringwald, J. T. Eppig, J. A. Kadin, J. E. Richardson, and the Gene Expression Database Group GXD: a Gene Expression Database for the laboratory mouse: current status and recent enhancements Nucleic Acids Res., January 1, 2000; 28(1): 115 - 119. [Abstract] [Full Text] [PDF]
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R. Overbeek, N. Larsen, G. D. Pusch, M. D'Souza, E. S. Jr, N. Kyrpides, M. Fonstein, N. Maltsev, and E. Selkov WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction Nucleic Acids Res., January 1, 2000; 28(1): 123 - 125. [Abstract] [Full Text] [PDF]
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D. R. Maglott, K. S. Katz, H. Sicotte, and K. D. Pruitt NCBI's LocusLink and RefSeq Nucleic Acids Res., January 1, 2000; 28(1): 126 - 128. [Abstract] [Full Text] [PDF]
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T. Kawashima, S. Kawashima, M. Kanehisa, H. Nishida, and K. W. Makabe MAGEST: MAboya Gene Expression patterns and Sequence Tags Nucleic Acids Res., January 1, 2000; 28(1): 133 - 135. [Abstract] [Full Text] [PDF]
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