Nucleic Acids Research, Vol 27, Issue 1 12-17, Copyright © 1999 by Oxford University Press
DA Benson, MS Boguski, DJ Lipman, J Ostell, BF Ouellette, BA Rapp and DL Wheeler
The GenBank (Registered Trademark symbol) sequence database incorporates
DNA sequences from all available public sources, primarily through the
direct submission of sequence data from individual laboratories and from
large-scale sequencing projects. Most submitters use the BankIt (Web) or
Sequin programs to format and send sequence data. Data exchange with the
EMBL Data Library and the DNA Data Bank of Japan helps ensure comprehensive
worldwide coverage. GenBank data is accessible through NCBI's integrated
retrieval system, Entrez, which integrates data from the major DNA and
protein sequence databases along with taxonomy, genome and protein
structure information. MEDLINE (Registered Trademark symbol) s from
published articles describing the sequences are included as an additional
source of biological annotation through the PubMed search system. Sequence
similarity searching is offered through the BLAST series of database search
programs. In addition to FTP, Email, and server/client versions of Entrez
and BLAST, NCBI offers a wide range of World Wide Web retrieval and
analysis services based on GenBank data. The GenBank database and related
resources are freely accessible via the URL: http://www.ncbi.nlm.nih.gov
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 |
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|
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