Nucleic Acids Research, Vol 27, Issue 1 215-219, Copyright © 1999 by Oxford University Press
K Hofmann, P Bucher, L Falquet and A Bairoch
The PROSITE database (http://www.expasy.ch/sprot/prosite.htm l) consists of
biologically significant patterns and profiles formulated in such a way
that with appropriate computational tools it can help to determine to which
known family of protein (if any) a new sequence belongs, or which known
domain(s) it contains.
ARTICLES
The PROSITE database, its status in 1999
MEMOREC, Stoffel GmbH, Stoeckheimer Weg 1, D-50829 Koeln, Germany, Swiss Institute of Bioinformatics (SIB), Swiss Institute for Experimental Cancer Research (ISREC), CH-1066 Epalinges/Lausanne, Switzerland.
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|
|
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|
|
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|
|
|
|
 |
|
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|
|
|
|
 |
|
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|
|
|
|
 |
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
 |
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
 |
|
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|
|
|
|
 |
|
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|
|
|
|
 |
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|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
 |
|
 K. G. Hamil, Q. Liu, P. Sivashanmugam, S. Yenugu, R. Soundararajan, G. Grossman, R. T. Richardson, Y.-L. Zhang, M. G. O'Rand, P. Petrusz, et al. Cystatin 11: A New Member of the Cystatin Type 2 Family Endocrinology, July 1, 2002; 143(7): 2787 - 2796. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
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|
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|
|
|
|
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T. Morishita, Y. Tsutsui, H. Iwasaki, and H. Shinagawa The Schizosaccharomyces pombe rad60 Gene Is Essential for Repairing Double-Strand DNA Breaks Spontaneously Occurring during Replication and Induced by DNA-Damaging Agents Mol. Cell. Biol., May 15, 2002; 22(10): 3537 - 3548. [Abstract] [Full Text] [PDF]
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R. Guerranti, J. C. Aguiyi, S. Neri, R. Leoncini, R. Pagani, and E. Marinello Proteins from Mucuna pruriens and Enzymes from Echis carinatus Venom. CHARACTERIZATION AND CROSS-REACTIONS J. Biol. Chem., May 3, 2002; 277(19): 17072 - 17078. [Abstract] [Full Text] [PDF]
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K. M. Jones and R. Haselkorn Newly Identified Cytochrome c Oxidase Operon in the Nitrogen-Fixing Cyanobacterium Anabaena sp. Strain PCC 7120 Specifically Induced in Heterocysts J. Bacteriol., May 1, 2002; 184(9): 2491 - 2499. [Abstract] [Full Text] [PDF]
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M. Christmann, M. T. Tomicic, and B. Kaina Phosphorylation of mismatch repair proteins MSH2 and MSH6 affecting MutS{alpha} mismatch-binding activity Nucleic Acids Res., May 1, 2002; 30(9): 1959 - 1966. [Abstract] [Full Text] [PDF]
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A. Johner and B. Lanzrein Characterization of two genes of the polydnavirus of Chelonus inanitus and their stage-specific expression in the host Spodoptera littoralis J. Gen. Virol., May 1, 2002; 83(5): 1075 - 1085. [Abstract] [Full Text] [PDF]
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D. Kihara, Y. Zhang, H. Lu, A. Kolinski, and J. Skolnick Ab initio protein structure prediction on a genomic scale: Application to the Mycoplasma genitalium genome PNAS, April 30, 2002; 99(9): 5993 - 5998. [Abstract] [Full Text] [PDF]
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 S. A. Goff, D. Ricke, T.-H. Lan, G. Presting, R. Wang, M. Dunn, J. Glazebrook, A. Sessions, P. Oeller, H. Varma, et al. A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica) Science, April 5, 2002; 296(5565): 92 - 100. [Abstract] [Full Text] [PDF]
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G. E. Allison, D. Angeles, N. Tran-Dinh, and N. K. Verma Complete Genomic Sequence of SfV, a Serotype-Converting Temperate Bacteriophage of Shigellaflexneri J. Bacteriol., April 1, 2002; 184(7): 1974 - 1987. [Abstract] [Full Text] [PDF]
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A. J. Enright, S. Van Dongen, and C. A. Ouzounis An efficient algorithm for large-scale detection of protein families Nucleic Acids Res., April 1, 2002; 30(7): 1575 - 1584. [Abstract] [Full Text] [PDF]
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J. Schug, S. Diskin, J. Mazzarelli, B. P. Brunk, and C. J. Stoeckert Jr. Predicting Gene Ontology Functions from ProDom and CDD Protein Domains Genome Res., April 1, 2002; 12(4): 648 - 655. [Abstract] [Full Text] [PDF]
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S. Bird, T. Wang, J. Zou, C. Cunningham, and C. J. Secombes The First Cytokine Sequence Within Cartilaginous Fish: IL-1{beta} in the Small Spotted Catshark (Scyliorhinus canicula) J. Immunol., April 1, 2002; 168(7): 3329 - 3340. [Abstract] [Full Text] [PDF]
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H. P. Su, K. Nakada-Tsukui, A.-C. Tosello-Trampont, Y. Li, G. Bu, P. M. Henson, and K. S. Ravichandran Interaction of CED-6/GULP, an Adapter Protein Involved in Engulfment of Apoptotic Cells with CED-1 and CD91/Low Density Lipoprotein Receptor-related Protein (LRP) J. Biol. Chem., March 29, 2002; 277(14): 11772 - 11779. [Abstract] [Full Text] [PDF]
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L. Z. Scheifele, R. A. Garbitt, J. D. Rhoads, and L. J. Parent Nuclear entry and CRM1-dependent nuclear export of the Rous sarcoma virus Gag polyprotein PNAS, March 19, 2002; 99(6): 3944 - 3949. [Abstract] [Full Text] [PDF]
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S. Agarwalla, J. T. Kealey, D. V. Santi, and R. M. Stroud Characterization of the 23 S Ribosomal RNA m5U1939 Methyltransferase from Escherichia coli J. Biol. Chem., March 8, 2002; 277(11): 8835 - 8840. [Abstract] [Full Text] [PDF]
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N. Kato, S. Suyama, M. Shirokane, M. Kato, T. Kobayashi, and N. Tsukagoshi Novel {alpha}-Glucosidase from Aspergillus nidulans with Strong Transglycosylation Activity Appl. Envir. Microbiol., March 1, 2002; 68(3): 1250 - 1256. [Abstract] [Full Text] [PDF]
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D. W.A. Buchan, A. J. Shepherd, D. Lee, F. M.G. Pearl, S. C.G. Rison, J. M. Thornton, and C. A. Orengo Gene3D: Structural Assignment for Whole Genes and Genomes Using the CATH Domain Structure Database Genome Res., March 1, 2002; 12(3): 503 - 514. [Abstract] [Full Text] [PDF]
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 C. Huang, X. Zhang, Q. Lin, X. Xu, Z. Hu, and C.-L. Hew Proteomic Analysis of Shrimp White Spot Syndrome Viral Proteins and Characterization of a Novel Envelope Protein VP466 Mol. Cell. Proteomics, March 1, 2002; 1(3): 223 - 231. [Abstract] [Full Text] [PDF]
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 C. Iavarone, C. Wolfgang, V. Kumar, P. Duray, M. Willingham, I. Pastan, and T. K. Bera PAGE4 Is a Cytoplasmic Protein That Is Expressed in Normal Prostate and in Prostate Cancers Mol. Cancer Ther., March 1, 2002; 1(5): 329 - 335. [Abstract] [Full Text] [PDF]
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M. Schubert, U. A. Petersson, B. J. Haas, C. Funk, W. P. Schroder, and T. Kieselbach Proteome Map of the Chloroplast Lumen of Arabidopsis thaliana J. Biol. Chem., March 1, 2002; 277(10): 8354 - 8365. [Abstract] [Full Text] [PDF]
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 H. Chen, Y. Pan, E. A. Wong, J. R. Bloomquist, and K. E. Webb Jr. Molecular Cloning and Functional Expression of a Chicken Intestinal Peptide Transporter (cPepT1) in Xenopus Oocytes and Chinese Hamster Ovary Cells J. Nutr., March 1, 2002; 132(3): 387 - 393. [Abstract] [Full Text] [PDF]
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 M. Lin, D. R. Sutherland, W. Horsfall, N. Totty, E. Yeo, R. Nayar, X.-F. Wu, and A. C. Schuh Cell surface antigen CD109 is a novel member of the alpha 2 macroglobulin/C3, C4, C5 family of thioester-containing proteins Blood, March 1, 2002; 99(5): 1683 - 1691. [Abstract] [Full Text] [PDF]
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 R. J. Kelso, A. M. Hudson, and L. Cooley Drosophila Kelch regulates actin organization via Src64-dependent tyrosine phosphorylation J. Cell Biol., February 18, 2002; 156(4): 703 - 713. [Abstract] [Full Text] [PDF]
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