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Nucleic Acids Research, Vol 27, Issue 1 215-219, Copyright © 1999 by Oxford University Press


ARTICLES

The PROSITE database, its status in 1999

K Hofmann, P Bucher, L Falquet and A Bairoch
MEMOREC, Stoffel GmbH, Stoeckheimer Weg 1, D-50829 Koeln, Germany, Swiss Institute of Bioinformatics (SIB), Swiss Institute for Experimental Cancer Research (ISREC), CH-1066 Epalinges/Lausanne, Switzerland.

The PROSITE database (http://www.expasy.ch/sprot/prosite.htm l) consists of biologically significant patterns and profiles formulated in such a way that with appropriate computational tools it can help to determine to which known family of protein (if any) a new sequence belongs, or which known domain(s) it contains.
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J. Bacteriol.Home page
C. Wanner and J. Soppa
Functional Role for a 2-Oxo Acid Dehydrogenase in the Halophilic Archaeon Haloferax volcanii
J. Bacteriol., June 1, 2002; 184(11): 3114 - 3121.
[Abstract] [Full Text] [PDF]


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MicrobiologyHome page
K. Endo, K. Hosono, T. Beppu, and K. Ueda
A novel extracytoplasmic phenol oxidase of Streptomyces: its possible involvement in the onset of morphogenesis
Microbiology, June 1, 2002; 148(6): 1767 - 1776.
[Abstract] [Full Text] [PDF]


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Plant Physiol.Home page
S.-H. Cheng, M. R. Willmann, H.-C. Chen, and J. Sheen
Calcium Signaling through Protein Kinases. The Arabidopsis Calcium-Dependent Protein Kinase Gene Family
Plant Physiology, June 1, 2002; 129(2): 469 - 485.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
N. Saydam, T. K. Adams, F. Steiner, W. Schaffner, and J. H. Freedman
Regulation of Metallothionein Transcription by the Metal-responsive Transcription Factor MTF-1. IDENTIFICATION OF SIGNAL TRANSDUCTION CASCADES THAT CONTROL METAL-INDUCIBLE TRANSCRIPTION
J. Biol. Chem., May 31, 2002; 277(23): 20438 - 20445.
[Abstract] [Full Text] [PDF]


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Proc. Natl. Acad. Sci. USAHome page
T. Petnicki-Ocwieja, D. J. Schneider, V. C. Tam, S. T. Chancey, L. Shan, Y. Jamir, L. M. Schechter, M. D. Janes, C. R. Buell, X. Tang, et al.
Genomewide identification of proteins secreted by the Hrp type III protein secretion system of Pseudomonas syringae pv. tomato DC3000
PNAS, May 28, 2002; 99(11): 7652 - 7657.
[Abstract] [Full Text] [PDF]


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Mol. Cell. Biol.Home page
T. Morishita, Y. Tsutsui, H. Iwasaki, and H. Shinagawa
The Schizosaccharomyces pombe rad60 Gene Is Essential for Repairing Double-Strand DNA Breaks Spontaneously Occurring during Replication and Induced by DNA-Damaging Agents
Mol. Cell. Biol., May 15, 2002; 22(10): 3537 - 3548.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
R. Guerranti, J. C. Aguiyi, S. Neri, R. Leoncini, R. Pagani, and E. Marinello
Proteins from Mucuna pruriens and Enzymes from Echis carinatus Venom. CHARACTERIZATION AND CROSS-REACTIONS
J. Biol. Chem., May 3, 2002; 277(19): 17072 - 17078.
[Abstract] [Full Text] [PDF]


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J. Bacteriol.Home page
K. M. Jones and R. Haselkorn
Newly Identified Cytochrome c Oxidase Operon in the Nitrogen-Fixing Cyanobacterium Anabaena sp. Strain PCC 7120 Specifically Induced in Heterocysts
J. Bacteriol., May 1, 2002; 184(9): 2491 - 2499.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
M. Christmann, M. T. Tomicic, and B. Kaina
Phosphorylation of mismatch repair proteins MSH2 and MSH6 affecting MutS{alpha} mismatch-binding activity
Nucleic Acids Res., May 1, 2002; 30(9): 1959 - 1966.
[Abstract] [Full Text] [PDF]


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J. Gen. Virol.Home page
A. Johner and B. Lanzrein
Characterization of two genes of the polydnavirus of Chelonus inanitus and their stage-specific expression in the host Spodoptera littoralis
J. Gen. Virol., May 1, 2002; 83(5): 1075 - 1085.
[Abstract] [Full Text] [PDF]


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Proc. Natl. Acad. Sci. USAHome page
D. Kihara, Y. Zhang, H. Lu, A. Kolinski, and J. Skolnick
Ab initio protein structure prediction on a genomic scale: Application to the Mycoplasma genitalium genome
PNAS, April 30, 2002; 99(9): 5993 - 5998.
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ScienceHome page
S. A. Goff, D. Ricke, T.-H. Lan, G. Presting, R. Wang, M. Dunn, J. Glazebrook, A. Sessions, P. Oeller, H. Varma, et al.
A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)
Science, April 5, 2002; 296(5565): 92 - 100.
[Abstract] [Full Text] [PDF]


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J. Bacteriol.Home page
G. E. Allison, D. Angeles, N. Tran-Dinh, and N. K. Verma
Complete Genomic Sequence of SfV, a Serotype-Converting Temperate Bacteriophage of Shigellaflexneri
J. Bacteriol., April 1, 2002; 184(7): 1974 - 1987.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
A. J. Enright, S. Van Dongen, and C. A. Ouzounis
An efficient algorithm for large-scale detection of protein families
Nucleic Acids Res., April 1, 2002; 30(7): 1575 - 1584.
[Abstract] [Full Text] [PDF]


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Genome ResHome page
J. Schug, S. Diskin, J. Mazzarelli, B. P. Brunk, and C. J. Stoeckert Jr.
Predicting Gene Ontology Functions from ProDom and CDD Protein Domains
Genome Res., April 1, 2002; 12(4): 648 - 655.
[Abstract] [Full Text] [PDF]


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J. Immunol.Home page
S. Bird, T. Wang, J. Zou, C. Cunningham, and C. J. Secombes
The First Cytokine Sequence Within Cartilaginous Fish: IL-1{beta} in the Small Spotted Catshark (Scyliorhinus canicula)
J. Immunol., April 1, 2002; 168(7): 3329 - 3340.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
H. P. Su, K. Nakada-Tsukui, A.-C. Tosello-Trampont, Y. Li, G. Bu, P. M. Henson, and K. S. Ravichandran
Interaction of CED-6/GULP, an Adapter Protein Involved in Engulfment of Apoptotic Cells with CED-1 and CD91/Low Density Lipoprotein Receptor-related Protein (LRP)
J. Biol. Chem., March 29, 2002; 277(14): 11772 - 11779.
[Abstract] [Full Text] [PDF]


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Proc. Natl. Acad. Sci. USAHome page
L. Z. Scheifele, R. A. Garbitt, J. D. Rhoads, and L. J. Parent
Nuclear entry and CRM1-dependent nuclear export of the Rous sarcoma virus Gag polyprotein
PNAS, March 19, 2002; 99(6): 3944 - 3949.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
S. Agarwalla, J. T. Kealey, D. V. Santi, and R. M. Stroud
Characterization of the 23 S Ribosomal RNA m5U1939 Methyltransferase from Escherichia coli
J. Biol. Chem., March 8, 2002; 277(11): 8835 - 8840.
[Abstract] [Full Text] [PDF]


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Appl. Environ. Microbiol.Home page
N. Kato, S. Suyama, M. Shirokane, M. Kato, T. Kobayashi, and N. Tsukagoshi
Novel {alpha}-Glucosidase from Aspergillus nidulans with Strong Transglycosylation Activity
Appl. Envir. Microbiol., March 1, 2002; 68(3): 1250 - 1256.
[Abstract] [Full Text] [PDF]


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Genome ResHome page
D. W.A. Buchan, A. J. Shepherd, D. Lee, F. M.G. Pearl, S. C.G. Rison, J. M. Thornton, and C. A. Orengo
Gene3D: Structural Assignment for Whole Genes and Genomes Using the CATH Domain Structure Database
Genome Res., March 1, 2002; 12(3): 503 - 514.
[Abstract] [Full Text] [PDF]


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Mol. Cell. ProteomicsHome page
C. Huang, X. Zhang, Q. Lin, X. Xu, Z. Hu, and C.-L. Hew
Proteomic Analysis of Shrimp White Spot Syndrome Viral Proteins and Characterization of a Novel Envelope Protein VP466
Mol. Cell. Proteomics, March 1, 2002; 1(3): 223 - 231.
[Abstract] [Full Text] [PDF]


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Molecular Cancer TherapeuticsHome page
C. Iavarone, C. Wolfgang, V. Kumar, P. Duray, M. Willingham, I. Pastan, and T. K. Bera
PAGE4 Is a Cytoplasmic Protein That Is Expressed in Normal Prostate and in Prostate Cancers
Mol. Cancer Ther., March 1, 2002; 1(5): 329 - 335.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
M. Schubert, U. A. Petersson, B. J. Haas, C. Funk, W. P. Schroder, and T. Kieselbach
Proteome Map of the Chloroplast Lumen of Arabidopsis thaliana
J. Biol. Chem., March 1, 2002; 277(10): 8354 - 8365.
[Abstract] [Full Text] [PDF]


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J. Nutr.Home page
H. Chen, Y. Pan, E. A. Wong, J. R. Bloomquist, and K. E. Webb Jr.
Molecular Cloning and Functional Expression of a Chicken Intestinal Peptide Transporter (cPepT1) in Xenopus Oocytes and Chinese Hamster Ovary Cells
J. Nutr., March 1, 2002; 132(3): 387 - 393.
[Abstract] [Full Text] [PDF]


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BloodHome page
M. Lin, D. R. Sutherland, W. Horsfall, N. Totty, E. Yeo, R. Nayar, X.-F. Wu, and A. C. Schuh
Cell surface antigen CD109 is a novel member of the alpha 2 macroglobulin/C3, C4, C5 family of thioester-containing proteins
Blood, March 1, 2002; 99(5): 1683 - 1691.
[Abstract] [Full Text] [PDF]


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JCBHome page
R. J. Kelso, A. M. Hudson, and L. Cooley
Drosophila Kelch regulates actin organization via Src64-dependent tyrosine phosphorylation
J. Cell Biol., February 18, 2002; 156(4): 703 - 713.
[Abstract] [Full Text] [PDF]



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