Nucleic Acids Research, Vol 27, Issue 1 297-300, Copyright © 1999 by Oxford University Press
K Higo, Y Ugawa, M Iwamoto and T Korenaga
PLACE (http://www.dna.affrc.go.jp/htdocs/PLACE/) is a database of
nucleotide sequence motifs found in plant cis-acting regulatory DNA
elements. Motifs were extracted from previously published reports on genes
in vascular plants. In addition to the motifs originally reported, their
variations in other genes or in other plant species in later reports are
also compiled. Documents for each motif in the PLACE database contains, in
addition to a motif sequence, a brief definition and description of each
motif, and relevant literature with PubMed ID numbers and GenBank accession
numbers where available. Users can search their query sequences for
cis-elements using the Signal Scan program at our web site. The results
will be reported in one of the three forms. Clicking the PLACE accession
numbers in the result report will open the pertinent motif document.
Clicking the PubMed or GenBank accession number in the document will allow
users to access to these databases, and to read the of the literature or
the annotation in the DNA database. This report summarizes the present
status of this database and available tools.
ARTICLES
Plant cis-acting regulatory DNA elements (PLACE) database: 1999
Department of Genetic Resources, National Institute of Agrobiological Resources, 2-1-2 Kannondai, Tsukuba,Ibaraki 305, Japan. kenhigo@abr.affrc.go.jp
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A Tittarelli, L Milla, F Vargas, A Morales, C Neupert, L. Meisel, H Salvo-G, E Penaloza, G Munoz, L. Corcuera, et al. Isolation and comparative analysis of the wheat TaPT2 promoter: identification in silico of new putative regulatory motifs conserved between monocots and dicots J. Exp. Bot., July 1, 2007; 58(10): 2573 - 2582. [Abstract] [Full Text] [PDF]
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R. Kannangara, C. Branigan, Y. Liu, T. Penfield, V. Rao, G. Mouille, H. Hofte, M. Pauly, J. L. Riechmann, and P. Broun The Transcription Factor WIN1/SHN1 Regulates Cutin Biosynthesis in Arabidopsis thaliana PLANT CELL, April 1, 2007; 19(4): 1278 - 1294. [Abstract] [Full Text] [PDF]
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X. Cao, L. M. Costa, C. Biderre-Petit, B. Kbhaya, N. Dey, P. Perez, D. R. McCarty, J. F. Gutierrez-Marcos, and P. W. Becraft Abscisic Acid and Stress Signals Induce Viviparous1 Expression in Seed and Vegetative Tissues of Maize Plant Physiology, February 1, 2007; 143(2): 720 - 731. [Abstract] [Full Text] [PDF]
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T. Obayashi, K. Kinoshita, K. Nakai, M. Shibaoka, S. Hayashi, M. Saeki, D. Shibata, K. Saito, and H. Ohta ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis Nucleic Acids Res., January 12, 2007; 35(suppl_1): D863 - D869. [Abstract] [Full Text] [PDF]
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C. Galuschka, M. Schindler, L. Bulow, and R. Hehl AthaMap web tools for the analysis and identification of co-regulated genes Nucleic Acids Res., January 12, 2007; 35(suppl_1): D857 - D862. [Abstract] [Full Text] [PDF]
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Y. Tamada, K. Nakamori, H. Nakatani, K. Matsuda, S. Hata, T. Furumoto, and K. Izui Temporary Expression of the TAF10 Gene and its Requirement for Normal Development of Arabidopsis thaliana Plant Cell Physiol., January 1, 2007; 48(1): 134 - 146. [Abstract] [Full Text] [PDF]
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M. Loivamaki, S. Louis, G. Cinege, I. Zimmer, R. J. Fischbach, and J.-P. Schnitzler Circadian Rhythms of Isoprene Biosynthesis in Grey Poplar Leaves Plant Physiology, January 1, 2007; 143(1): 540 - 551. [Abstract] [Full Text] [PDF]
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G. Haberer, M. T. Mader, P. Kosarev, M. Spannagl, L. Yang, and K. F.X. Mayer Large-Scale cis-Element Detection by Analysis of Correlated Expression and Sequence Conservation between Arabidopsis and Brassica oleracea Plant Physiology, December 1, 2006; 142(4): 1589 - 1602. [Abstract] [Full Text] [PDF]
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L. Bentsink, J. Jowett, C. J. Hanhart, and M. Koornneef Cloning of DOG1, a quantitative trait locus controlling seed dormancy in Arabidopsis PNAS, November 7, 2006; 103(45): 17042 - 17047. [Abstract] [Full Text] [PDF]
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