Nucleic Acids Research, Vol 27, Issue 1 297-300, Copyright © 1999 by Oxford University Press
K Higo, Y Ugawa, M Iwamoto and T Korenaga
PLACE (http://www.dna.affrc.go.jp/htdocs/PLACE/) is a database of
nucleotide sequence motifs found in plant cis-acting regulatory DNA
elements. Motifs were extracted from previously published reports on genes
in vascular plants. In addition to the motifs originally reported, their
variations in other genes or in other plant species in later reports are
also compiled. Documents for each motif in the PLACE database contains, in
addition to a motif sequence, a brief definition and description of each
motif, and relevant literature with PubMed ID numbers and GenBank accession
numbers where available. Users can search their query sequences for
cis-elements using the Signal Scan program at our web site. The results
will be reported in one of the three forms. Clicking the PLACE accession
numbers in the result report will open the pertinent motif document.
Clicking the PubMed or GenBank accession number in the document will allow
users to access to these databases, and to read the of the literature or
the annotation in the DNA database. This report summarizes the present
status of this database and available tools.
ARTICLES
Plant cis-acting regulatory DNA elements (PLACE) database: 1999
Department of Genetic Resources, National Institute of Agrobiological Resources, 2-1-2 Kannondai, Tsukuba,Ibaraki 305, Japan. kenhigo@abr.affrc.go.jp
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J. Liu, K.-F. Xia, J.-C. Zhu, Y.-G. Deng, X.-L. Huang, B.-L. Hu, X. Xu, and Z.-F. Xu The Nightshade Proteinase Inhibitor IIb Gene is Constitutively Expressed in Glandular Trichomes Plant Cell Physiol., September 1, 2006; 47(9): 1274 - 1284. [Abstract] [Full Text] [PDF]
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R. Wang, K. Chong, and T. Wang Divergence in spatial expression patterns and in response to stimuli of tandem-repeat paralogues encoding a novel class of proline-rich proteins in Oryza sativa J. Exp. Bot., August 1, 2006; 57(11): 2887 - 2897. [Abstract] [Full Text] [PDF]
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M. Kankainen, P. Pehkonen, P. Rosenstom, P. Toronen, G. Wong, and L. Holm POXO: a web-enabled tool series to discover transcription factor binding sites. Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W534 - W540. [Abstract] [Full Text] [PDF]
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W. El Kayal, M. Navarro, G. Marque, G. Keller, C. Marque, and C. Teulieres Expression profile of CBF-like transcriptional factor genes from Eucalyptus in response to cold J. Exp. Bot., July 1, 2006; 57(10): 2455 - 2469. [Abstract] [Full Text] [PDF]
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H. Yi, N. Sardesai, T. Fujinuma, C.-W. Chan, Veena, and S. B. Gelvin Constitutive Expression Exposes Functional Redundancy between the Arabidopsis Histone H2A Gene HTA1 and Other H2A Gene Family Members PLANT CELL, July 1, 2006; 18(7): 1575 - 1589. [Abstract] [Full Text] [PDF]
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S. De Bodt, G. Theissen, and Y. Van de Peer Promoter Analysis of MADS-Box Genes in Eudicots Through Phylogenetic Footprinting Mol. Biol. Evol., June 1, 2006; 23(6): 1293 - 1303. [Abstract] [Full Text] [PDF]
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M. Chatterjee, P. Sharma, and J. P. Khurana Cryptochrome 1 from Brassica napus Is Up-Regulated by Blue Light and Controls Hypocotyl/Stem Growth and Anthocyanin Accumulation Plant Physiology, May 1, 2006; 141(1): 61 - 74. [Abstract] [Full Text] [PDF]
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T. Raab, J. A. Lopez-Raez, D. Klein, J. L. Caballero, E. Moyano, W. Schwab, and J. Munoz-Blanco FaQR, Required for the Biosynthesis of the Strawberry Flavor Compound 4-Hydroxy-2,5-Dimethyl-3(2H)-Furanone, Encodes an Enone Oxidoreductase PLANT CELL, April 1, 2006; 18(4): 1023 - 1037. [Abstract] [Full Text] [PDF]
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 Y. Li, K. K. Lee, S. Walsh, C. Smith, S. Hadingham, K. Sorefan, G. Cawley, and M. W. Bevan Establishing glucose- and ABA-regulated transcription networks in Arabidopsis by microarray analysis and promoter classification using a Relevance Vector Machine Genome Res., March 1, 2006; 16(3): 414 - 427. [Abstract] [Full Text] [PDF]
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J. Borecky, F. T. S. Nogueira, K. A. P. de Oliveira, I. G. Maia, A. E. Vercesi, and P. Arruda The plant energy-dissipating mitochondrial systems: depicting the genomic structure and the expression profiles of the gene families of uncoupling protein and alternative oxidase in monocots and dicots J. Exp. Bot., March 1, 2006; 57(4): 849 - 864. [Abstract] [Full Text] [PDF]
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