Nucleic Acids Research, Vol 27, Issue 1 297-300, Copyright © 1999 by Oxford University Press
K Higo, Y Ugawa, M Iwamoto and T Korenaga
PLACE (http://www.dna.affrc.go.jp/htdocs/PLACE/) is a database of
nucleotide sequence motifs found in plant cis-acting regulatory DNA
elements. Motifs were extracted from previously published reports on genes
in vascular plants. In addition to the motifs originally reported, their
variations in other genes or in other plant species in later reports are
also compiled. Documents for each motif in the PLACE database contains, in
addition to a motif sequence, a brief definition and description of each
motif, and relevant literature with PubMed ID numbers and GenBank accession
numbers where available. Users can search their query sequences for
cis-elements using the Signal Scan program at our web site. The results
will be reported in one of the three forms. Clicking the PLACE accession
numbers in the result report will open the pertinent motif document.
Clicking the PubMed or GenBank accession number in the document will allow
users to access to these databases, and to read the of the literature or
the annotation in the DNA database. This report summarizes the present
status of this database and available tools.
ARTICLES
Plant cis-acting regulatory DNA elements (PLACE) database: 1999
Department of Genetic Resources, National Institute of Agrobiological Resources, 2-1-2 Kannondai, Tsukuba,Ibaraki 305, Japan. kenhigo@abr.affrc.go.jp
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T. Shinya, I. Galis, T. Narisawa, M. Sasaki, H. Fukuda, H. Matsuoka, M. Saito, and K. Matsuoka Comprehensive Analysis of Glucan Elicitor-Regulated Gene Expression in Tobacco BY-2 Cells Reveals a Novel MYB Transcription Factor Involved in the Regulation of Phenylpropanoid Metabolism Plant Cell Physiol., October 1, 2007; 48(10): 1404 - 1413. [Abstract] [Full Text] [PDF]
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M. Rajinikanth, S. A. Harding, and C.-J. Tsai The glycine decarboxylase complex multienzyme family in Populus J. Exp. Bot., May 1, 2007; 58(7): 1761 - 1770. [Abstract] [Full Text] [PDF]
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M. Freeling, L. Rapaka, E. Lyons, B. Pedersen, and B. C. Thomas G-Boxes, Bigfoot Genes, and Environmental Response: Characterization of Intragenomic Conserved Noncoding Sequences in Arabidopsis PLANT CELL, May 1, 2007; 19(5): 1441 - 1457. [Abstract] [Full Text] [PDF]
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 C. He, H. Sommer, B. Grosardt, P. Huijser, and H. Saedler PFMAGO, a MAGO NASHI-Like Factor, Interacts with the MADS-Domain Protein MPF2 from Physalis floridana Mol. Biol. Evol., May 1, 2007; 24(5): 1229 - 1241. [Abstract] [Full Text] [PDF]
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R. Kannangara, C. Branigan, Y. Liu, T. Penfield, V. Rao, G. Mouille, H. Hofte, M. Pauly, J. L. Riechmann, and P. Broun The Transcription Factor WIN1/SHN1 Regulates Cutin Biosynthesis in Arabidopsis thaliana PLANT CELL, April 1, 2007; 19(4): 1278 - 1294. [Abstract] [Full Text] [PDF]
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S. Shimada, H. Otsuki, and M. Sakuta Transcriptional control of anthocyanin biosynthetic genes in the Caryophyllales J. Exp. Bot., March 1, 2007; 58(5): 957 - 967. [Abstract] [Full Text] [PDF]
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Y. Kodama, S. Nagaya, A. Shinmyo, and K. Kato Mapping and Characterization of DNase I Hypersensitive Sites in Arabidopsis Chromatin Plant Cell Physiol., March 1, 2007; 48(3): 459 - 470. [Abstract] [Full Text] [PDF]
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I. Roxrud, S. E. Lid, J. C. Fletcher, E. D. L. Schmidt, and H.-G. Opsahl-Sorteberg GASA4, One of the 14-Member Arabidopsis GASA Family of Small Polypeptides, Regulates Flowering and Seed Development Plant Cell Physiol., March 1, 2007; 48(3): 471 - 483. [Abstract] [Full Text] [PDF]
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J. Bogs, F. W. Jaffe, A. M. Takos, A. R. Walker, and S. P. Robinson The Grapevine Transcription Factor VvMYBPA1 Regulates Proanthocyanidin Synthesis during Fruit Development Plant Physiology, March 1, 2007; 143(3): 1347 - 1361. [Abstract] [Full Text] [PDF]
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