Nucleic Acids Research, Vol 27, Issue 1 370-372, Copyright © 1999 by Oxford University Press
R Gupta, H Birch, K Rapacki, S Brunak and JE Hansen
O-GLYCBASE is a database of glycoproteins with O-linked glycosylation
sites. Entries with at least one experimentally verified O- glycosylation
site have been compiled from protein sequence databases and literature.
Each entry contains information about the glycan involved, the species,
sequence, a literature reference and http-linked cross-references to other
databases. Version 4.0 contains 179 protein entries, an approximate 15%
increase over the last version. Sequence logos representing the acceptor
specificity patterns for GalNAc, GlcNAc, mannosyl and xylosyl transferases
are shown. The O-GLYCBASE database is available through the WWW at
http://www.cbs.dtu.dk/databases/OGLYCBASE/
ARTICLES
O-GLYCBASE version 4.0: a revised database of O-glycosylated proteins
Center for Biological Sequence Analysis, The Technical University of Denmark, DK-2800 Lyngby, Denmark. ramneek@cbs.dtu.dk
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