Nucleic Acids Research, Vol 27, Issue 1 55-58, Copyright © 1999 by Oxford University Press
PD Karp, M Riley, SM Paley, A Pellegrini-Toole and M Krummenacker
The EcoCyc database describes the genome and gene products of Escherichia
coli, its metabolic and signal-transduction pathways, and its tRNAs. The
database describes 4391 genes of E.coli, 695 enzymes encoded by a subset of
these genes, 904 metabolic reactions that occur in E.coli, and the
organization of these reactions into 129 metabolic pathways. The EcoCyc
graphical user interface allows scientists to query and explore the EcoCyc
database using visualization tools such as genomic-map browsers and
automatic layouts of metabolic pathways. EcoCyc has many references to the
primary literature, and is a (qualitative) computational model of E. coli
metabolism. EcoCyc is available at URL http://ecocyc.
PangeaSystems.com/ecocyc/
ARTICLES
Eco Cyc: encyclopedia of Escherichia coli genes and metabolism
Pangea Systems Inc., 4040 Campbell Avenue, Menlo Park, CA 94025, USA and Marine Biological Laboratory, Woods Hole, MA 02543, USA. pkarp@pangeasy.systems.com
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