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Nucleic Acids Research, Vol 27, Issue 1 85-88, Copyright © 1999 by Oxford University Press


ARTICLES

The FlyBase database of the Drosophila Genome Projects and community literature. The FlyBase Consortium


FlyBase, The Biological Laboratories, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA.

The FlyBase Drosophila genetics database and the public interfaces of the Berkeley Drosophila Genome Project (BDGP) and European Drosophila Genome Project (EDGP) are in the process of integrating. At present, the data of these projects are available from independent, but hyperlinked, WWW sites (FlyBase URL, http://flybase. bio.indiana.edu/; BDGP URL, http://fruitfly.berkeley.edu/; EDGP URL, http://edgp.ebi.ac.uk/ ). Because of the considerable overlap of data classes between the contributions of the Drosophila genome projects and the Drosophila community, the new and enlarged FlyBase consortium views the implementation of a single integrated Drosophila genomics/genetics server as essential to the scientific community. This integration will occur in a stepwise fashion over the next 1-2 years. In this report, the salient features of the current databases and how to interrogate and navigate the extensive data sets are discussed.
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Genome ResHome page
B. Lenhard, W. S. Hayes, and W. W. Wasserman
GeneLynx: A Gene-Centric Portal to the Human Genome
Genome Res., December 1, 2001; 11(12): 2151 - 2157.
[Abstract] [Full Text] [PDF]


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Genes Dev.Home page
S. L. Page and R. S. Hawley
c(3)G encodes a Drosophila synaptonemal complex protein
Genes & Dev., December 1, 2001; 15(23): 3130 - 3143.
[Abstract] [Full Text] [PDF]


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DevelopmentHome page
E. Decotto and E. L. Ferguson
A positive role for Short gastrulation in modulating BMP signaling during dorsoventral patterning in the Drosophila embryo
Development, October 1, 2001; 128(19): 3831 - 3841.
[Abstract] [Full Text] [PDF]


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DevelopmentHome page
G. R. Buckles, C. Rauskolb, J. L. Villano, and F. N. Katz
four-jointed interacts with dachs, abelson and enabled and feeds back onto the Notch pathway to affect growth and segmentation in the Drosophila leg
Development, September 15, 2001; 128(18): 3533 - 3542.
[Abstract] [Full Text] [PDF]


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Genome ResHome page
T. G. O. Consortium
Creating the Gene Ontology Resource: Design and Implementation
Genome Res., August 1, 2001; 11(8): 1425 - 1433.
[Abstract] [Full Text] [PDF]


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Proc. Natl. Acad. Sci. USAHome page
Y.-L. Chang, Y.-H. Peng, I-C. Pan, D.-S. Sun, B. King, and D.-H. Huang
Essential role of Drosophila Hdac1 in homeotic gene silencing
PNAS, August 1, 2001; (2001) 171325498.
[Abstract] [Full Text] [PDF]


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Mol. Biol. CellHome page
H. D. Hoyle, F. R. Turner, L. Brunick, and E. C. Raff
Tubulin Sorting during Dimerization In Vivo
Mol. Biol. Cell, July 1, 2001; 12(7): 2185 - 2194.
[Abstract] [Full Text] [PDF]


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GeneticsHome page
D. R. LaJeunesse, B. M. McCartney, and R. G. Fehon
A Systematic Screen for Dominant Second-Site Modifiers of Merlin/NF2 Phenotypes Reveals an Interaction With blistered/DSRF and scribbler
Genetics, June 1, 2001; 158(2): 667 - 679.
[Abstract] [Full Text] [PDF]


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Genome ResHome page
V. Ledent and M. Vervoort
The Basic Helix-Loop-Helix Protein Family: Comparative Genomics and Phylogenetic Analysis
Genome Res., May 1, 2001; 11(5): 754 - 770.
[Abstract] [Full Text]


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Proc. Natl. Acad. Sci. USAHome page
R. O. Stuart, K. T. Bush, and S. K. Nigam
Changes in global gene expression patterns during development and maturation of the rat kidney
PNAS, April 25, 2001; (2001) 91110798.
[Abstract] [Full Text]


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Nucleic Acids ResHome page
H. Yue, P. S. Eastman, B. B. Wang, J. Minor, M. H. Doctolero, R. L. Nuttall, R. Stack, J. W. Becker, J. R. Montgomery, M. Vainer, et al.
An evaluation of the performance of cDNA microarrays for detecting changes in global mRNA expression
Nucleic Acids Res., April 15, 2001; 29(8): e41 - e41.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
J. Qian, B. Stenger, C. A. Wilson, J. Lin, R. Jansen, S. A. Teichmann, J. Park, W. G. Krebs, H. Yu, V. Alexandrov, et al.
PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information
Nucleic Acids Res., April 15, 2001; 29(8): 1750 - 1764.
[Abstract] [Full Text] [PDF]


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JCBHome page
C. G. Zervas, S. L. Gregory, and N. H. Brown
Drosophila Integrin-Linked Kinase Is Required at Sites of Integrin Adhesion to Link the Cytoskeleton to the Plasma Membrane
J. Cell Biol., March 5, 2001; 152(5): 1007 - 1018.
[Abstract] [Full Text] [PDF]


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Proc. Natl. Acad. Sci. USAHome page
A. Saiardi, E. Nagata, H. R. Luo, A. Sawa, X. Luo, A. M. Snowman, and S. H. Snyder
Mammalian inositol polyphosphate multikinase synthesizes inositol 1,4,5-trisphosphate and an inositol pyrophosphate
PNAS, February 8, 2001; (2001) 41614598.
[Abstract] [Full Text]


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GeneticsHome page
E. Kurant, D. Eytan, and A. Salzberg
Mutational Analysis of the Drosophila homothorax Gene
Genetics, February 1, 2001; 157(2): 689 - 698.
[Abstract] [Full Text]


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GeneticsHome page
M. A. Su, R. G. Wisotzkey, and S. J. Newfeld
A Screen for Modifiers of decapentaplegic Mutant Phenotypes Identifies lilliputian, the Only Member of the Fragile-X/Burkitt's Lymphoma Family of Transcription Factors in Drosophila melanogaster
Genetics, February 1, 2001; 157(2): 717 - 725.
[Abstract] [Full Text]


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DevelopmentHome page
L. Dobens, E Martin-Blanco, A Martinez-Arias, F. Kafatos, and L. Raftery
Drosophila puckered regulates Fos/Jun levels during follicle cell morphogenesis
Development, January 5, 2001; 128(10): 1845 - 1856.
[Abstract] [PDF]


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DevelopmentHome page
P. Elstob, V Brodu, and A. Gould
spalt-dependent switching between two cell fates that are induced by the Drosophila EGF receptor
Development, January 3, 2001; 128(5): 723 - 732.
[Abstract] [PDF]


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DevelopmentHome page
T. Cline
A lesson from flex: consider the Y chromosome when assessing Drosophila sex-specific lethals
Development, January 3, 2001; 128(6): 1015 - 1018.
[Abstract] [PDF]


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Nucleic Acids ResHome page
G. Stoesser, W. Baker, A. van den Broek, E. Camon, M. Garcia-Pastor, C. Kanz, T. Kulikova, V. Lombard, R. Lopez, H. Parkinson, et al.
The EMBL nucleotide sequence database
Nucleic Acids Res., January 1, 2001; 29(1): 17 - 21.
[Abstract] [Full Text] [PDF]


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Nucleic Acids ResHome page
K. D. Pruitt and D. R. Maglott
RefSeq and LocusLink: NCBI gene-centered resources
Nucleic Acids Res., January 1, 2001; 29(1): 137 - 140.
[Abstract] [Full Text] [PDF]


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GeneticsHome page
K. A. Dunn, J. P. Bielawski, and Z. Yang
Substitution Rates in Drosophila Nuclear Genes: Implications for Translational Selection
Genetics, January 1, 2001; 157(1): 295 - 305.
[Abstract] [Full Text]



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