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Nucleic Acids Research, Vol 27, Issue 11 2291-2298, Copyright © 1999 by Oxford University Press


ARTICLES

The human DNA methyltransferases (DNMTs) 1, 3a and 3b: coordinate mRNA expression in normal tissues and overexpression in tumors

KD Robertson, E Uzvolgyi, G Liang, C Talmadge, J Sumegi, FA Gonzales and PA Jones
University of Southern California, Norris Comprehensive Cancer Center, MS 83, 1441 Eastlake Avenue, Los Angeles, CA 90033, USA.

DNA methylation in mammals is required for embryonic development, X chromosome inactivation and imprinting. Previous studies have shown that methylation patterns become abnormal in malignant cells and may contribute to tumorigenesis by improper de novo methylation and silencing of the promoters for growth-regulatory genes. RNA and protein levels of the DNA methyltransferase DNMT1 have been shown to be elevated in tumors, however murine stem cells lacking Dnmt1 are still able to de novo methylate viral DNA. The recent cloning of a new family of DNA methyltransferases (Dnmt3a and Dnmt3b) in mouse which methylate hemimethylated and unmethylated templates with equal efficiencies make them candidates for the long sought de novo methyltransferases. We have investigated the expression of human DNMT1, 3a and 3b and found widespread, coordinate expression of all three transcripts in most normal tissues. Chromosomal mapping placed DNMT3a on chromosome 2p23 and DNMT3b on chromosome 20q11.2. Significant overexpression of DNMT3b was seen in tumors while DNMT1 and DNMT3a were only modestly over- expressed and with lower frequency. Lastly, several novel alternatively spliced forms of DNMT3b, which may have altered enzymatic activity, were found to be expressed in a tissue-specific manner.
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J. Biol. Chem.Home page
J. Bakker, X. Lin, and W. G. Nelson
Methyl-CpG Binding Domain Protein 2 Represses Transcription from Hypermethylated pi -Class Glutathione S-Transferase Gene Promoters in Hepatocellular Carcinoma Cells
J. Biol. Chem., June 14, 2002; 277(25): 22573 - 22580.
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J. Biol. Chem.Home page
H. Gowher and A. Jeltsch
Molecular Enzymology of the Catalytic Domains of the Dnmt3a and Dnmt3b DNA Methyltransferases
J. Biol. Chem., May 31, 2002; 277(23): 20409 - 20414.
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J. Biol. Chem.Home page
S. Majumder, K. Ghoshal, J. Datta, S. Bai, X. Dong, N. Quan, C. Plass, and S. T. Jacob
Role of de Novo DNA Methyltransferases and Methyl CpG-binding Proteins in Gene Silencing in a Rat Hepatoma
J. Biol. Chem., May 3, 2002; 277(18): 16048 - 16058.
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Mol. Cell. Biol.Home page
B. N. Trinh, T. I. Long, A. E. Nickel, D. Shibata, and P. W. Laird
DNA Methyltransferase Deficiency Modifies Cancer Susceptibility in Mice Lacking DNA Mismatch Repair
Mol. Cell. Biol., May 1, 2002; 22(9): 2906 - 2917.
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Toxicol SciHome page
R. E. Watson and J. I. Goodman
Epigenetics and DNA Methylation Come of Age in Toxicology
Toxicol. Sci., May 1, 2002; 67(1): 11 - 16.
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Mol. Cell. Biol.Home page
D. Biniszkiewicz, J. Gribnau, B. Ramsahoye, F. Gaudet, K. Eggan, D. Humpherys, M.-A. Mastrangelo, Z. Jun, J. Walter, and R. Jaenisch
Dnmt1 Overexpression Causes Genomic Hypermethylation, Loss of Imprinting, and Embryonic Lethality
Mol. Cell. Biol., April 1, 2002; 22(7): 2124 - 2135.
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Cell Growth Differ.Home page
J. M. Ordway and T. Curran
Methylation Matters: Modeling a Manageable Genome
Cell Growth Differ., April 1, 2002; 13(4): 149 - 162.
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Cancer Res.Home page
M. Velicescu, D. J. Weisenberger, F. A. Gonzales, Y. C. Tsai, C. T. Nguyen, and P. A. Jones
Cell Division Is Required for de Novo Methylation of CpG Islands in Bladder Cancer Cells
Cancer Res., April 1, 2002; 62(8): 2378 - 2384.
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J. Biol. Chem.Home page
T. Yokochi and K. D. Robertson
Preferential Methylation of Unmethylated DNA by Mammalian de Novo DNA Methyltransferase Dnmt3a
J. Biol. Chem., March 29, 2002; 277(14): 11735 - 11745.
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Mol. Cell. Biol.Home page
G. Liang, M. F. Chan, Y. Tomigahara, Y. C. Tsai, F. A. Gonzales, E. Li, P. W. Laird, and P. A. Jones
Cooperativity between DNA Methyltransferases in the Maintenance Methylation of Repetitive Elements
Mol. Cell. Biol., January 15, 2002; 22(2): 480 - 491.
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Clin. Cancer Res.Home page
M. Widschwendter and P. A. Jones
The Potential Prognostic, Predictive, and Therapeutic Values of DNA Methylation in Cancer : Commentary re: J. Kwong et al., Promoter Hypermethylation of Multiple Genes in Nasopharyngeal Carcinoma. Clin. Cancer Res., 8: 131-137, 2002, and H-Z. Zou et al., Detection of Aberrant p16 Methylation in the Serum of Colorectal Cancer Patients. Clin. Cancer Res., 8: 188-191, 2002.
Clin. Cancer Res., January 1, 2002; 8(1): 17 - 21.
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J. Virol.Home page
J.-Y. Fang, J. A. Mikovits, R. Bagni, C. L. Petrow-Sadowski, and F. W. Ruscetti
Infection of Lymphoid Cells by Integration-Defective Human Immunodeficiency Virus Type 1 Increases De Novo Methylation
J. Virol., October 15, 2001; 75(20): 9753 - 9761.
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Hum Mol GenetHome page
B. Hendrich and W. Bickmore
Human diseases with underlying defects in chromatin structure and modification
Hum. Mol. Genet., October 1, 2001; 10(20): 2233 - 2242.
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BloodHome page
L. J. Rush, Z. Dai, D. J. Smiraglia, X. Gao, F. A. Wright, M. Fruhwald, J. F. Costello, W. A. Held, L. Yu, R. Krahe, et al.
Novel methylation targets in de novo acute myeloid leukemia with prevalence of chromosome 11 loci
Blood, May 15, 2001; 97(10): 3226 - 3233.
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Hum Mol GenetHome page
S. B. Baylin, M. Esteller, M. R. Rountree, K. E. Bachman, K. Schuebel, and J. G. Herman
Aberrant patterns of DNA methylation, chromatin formation and gene expression in cancer
Hum. Mol. Genet., April 1, 2001; 10(7): 687 - 692.
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BloodHome page
S.-i. Mizuno, T. Chijiwa, T. Okamura, K. Akashi, Y. Fukumaki, Y. Niho, and H. Sasaki
Expression of DNA methyltransferases DNMT1, 3A, and 3B in normal hematopoiesis and in acute and chronic myelogenous leukemia
Blood, March 1, 2001; 97(5): 1172 - 1179.
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Am. J. Pathol.Home page
Q. Zhang, P. N. Raghunath, E. Vonderheid, N. Odum, and M. A. Wasik
Lack of Phosphotyrosine Phosphatase SHP-1 Expression in Malignant T-Cell Lymphoma Cells Results from Methylation of the SHP-1 Promoter
Am. J. Pathol., October 1, 2000; 157(4): 1137 - 1146.
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Nucleic Acids ResHome page
N. Steward, T. Kusano, and H. Sano
Expression of ZmMET1, a gene encoding a DNA methyltransferase from maize, is associated not only with DNA replication in actively proliferating cells, but also with altered DNA methylation status in cold-stressed quiescent cells
Nucleic Acids Res., September 1, 2000; 28(17): 3250 - 3259.
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Nucleic Acids ResHome page
K. D. Robertson, K. Keyomarsi, F. A. Gonzales, M. Velicescu, and P. A. Jones
Differential mRNA expression of the human DNA methyltransferases (DNMTs) 1, 3a and 3b during the G0/G1 to S phase transition in normal and tumor cells
Nucleic Acids Res., May 15, 2000; 28(10): 2108 - 2113.
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CarcinogenesisHome page
K. D. Robertson and P. A.Jones
DNA methylation: past, present and future directions
Carcinogenesis, March 1, 2000; 21(3): 461 - 467.
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Proc. Natl. Acad. Sci. USAHome page
R. S. Hansen, C. Wijmenga, P. Luo, A. M. Stanek, T. K. Canfield, C. M. R. Weemaes, and S. M. Gartler
The DNMT3B DNA methyltransferase gene is mutated in the ICF immunodeficiency syndrome
PNAS, December 7, 1999; 96(25): 14412 - 14417.
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Mol. Cell. Biol.Home page
C.-L. Hsieh
In Vivo Activity of Murine De Novo Methyltransferases, Dnmt3a and Dnmt3b
Mol. Cell. Biol., December 1, 1999; 19(12): 8211 - 8218.
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