Nucleic Acids Research, Vol 27, Issue 22 4305-4313, Copyright © 1999 by Oxford University Press
H Barrios, B Valderrama and E Morett
Promoters recognized by the RNA-polymerase with the alternative sigma
factor sigma(54) (Esigma54) are unique in having conserved positions around
-24 and -12 nucleotides upstream from the transcriptional start site,
instead of the typical -35 and -10 boxes. Here we compile 186 - 24/-12
promoter sequences reported in the literature and generate an updated and
extended consensus sequence. The use of the extended consensus increases
the probability of identifying genuine -24/-12 promoters. The effect of
several reported mutations at the -24/-12 elements on RNA-polymerase
binding and promoter strength is discussed in the light of the updated
consensus.
ARTICLES
Compilation and analysis of sigma(54)-dependent promoter sequences
Departamento de Reconocimiento Molecular y Bioestructura, Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico, Cuernavaca, Morelos 62271, Mexico.
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