Nucleic Acids Research, 2000, Vol. 28, No. 1 231-234
© 2000 Oxford University Press
SMART: a web-based tool for the study of genetically mobile domains
1EMBL, Meyerhofstrasse1, 69012 Heidelberg, Germany, 2Max-Delbrück-Center, Berlin-Buch, Germany and 3MRC Functional Genetics Unit, Department of Human Anatomy and Genetics, University of Oxford, South Parks Road, Oxford OX1 3QX, UK
SMART (a Simple Modular Architecture Research Tool) allows the identification and annotation of genetically mobile domains and the analysis of domain architectures (http://SMART.embl-heidelberg.de ). More than 400 domain families found in signalling, extracellular and chromatin-associated proteins are detectable. These domains are extensively annotated with respect to phyletic distributions, functional class, tertiary structures and functionally important residues. Each domain found in a non-redundant protein database as well as search parameters and taxonomic information are stored in a relational database system. User interfaces to this database allow searches for proteins containing specific combinations of domains in defined taxa.
* To whom correspondence should be addressed at: EMBL, Meyerhofstrasse 1, 69012 Heidelberg, Germany. Tel: +49 6221 387526; Fax: +49 6221 387517; Email: bork@embl-heidelberg.de
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H. Qin, A. Percival-Smith, C. Li, C. Y. H. Jia, G. Gloor, and S. S.-C. Li A Novel Transmembrane Protein Recruits Numb to the Plasma Membrane during Asymmetric Cell Division J. Biol. Chem., March 19, 2004; 279(12): 11304 - 11312. [Abstract] [Full Text] [PDF]
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 K. Ishiguro and R. Xavier Homer-3 regulates activation of serum response element in T cells via its EVH1 domain Blood, March 15, 2004; 103(6): 2248 - 2256. [Abstract] [Full Text] [PDF]
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M. B. Howard, N. A. Ekborg, L. E. Taylor II, R. M. Weiner, and S. W. Hutcheson Chitinase B of "Microbulbifer degradans" 2-40 Contains Two Catalytic Domains with Different Chitinolytic Activities J. Bacteriol., March 1, 2004; 186(5): 1297 - 1303. [Abstract] [Full Text] [PDF]
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B. K. Zolman and B. Bartel An Arabidopsis indole-3-butyric acid-response mutant defective in PEROXIN6, an apparent ATPase implicated in peroxisomal function PNAS, February 10, 2004; 101(6): 1786 - 1791. [Abstract] [Full Text] [PDF]
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 J.-L. Imler and L. Zheng Biology of Toll receptors: lessons from insects and mammals J. Leukoc. Biol., January 1, 2004; 75(1): 18 - 26. [Abstract] [Full Text] [PDF]
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J. Gates, G. Lam, J. A. Ortiz, R. Losson, and C. S. Thummel rigor mortis encodes a novel nuclear receptor interacting protein required for ecdysone signaling during Drosophila larval development Development, January 1, 2004; 131(1): 25 - 36. [Abstract] [Full Text] [PDF]
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Y. Mudgil, S.-H. Shiu, S. L. Stone, J. N. Salt, and D. R. Goring A Large Complement of the Predicted Arabidopsis ARM Repeat Proteins Are Members of the U-Box E3 Ubiquitin Ligase Family Plant Physiology, January 1, 2004; 134(1): 59 - 66. [Abstract] [Full Text] [PDF]
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C. Vogel, S. A. Teichmann, and C. Chothia The immunoglobulin superfamily in Drosophila melanogaster and Caenorhabditis elegans and the evolution of complexity Development, December 22, 2003; 130(25): 6317 - 6328. [Abstract] [Full Text] [PDF]
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S. Moskalenko, C. Tong, C. Rosse, G. Mirey, E. Formstecher, L. Daviet, J. Camonis, and M. A. White Ral GTPases Regulate Exocyst Assembly through Dual Subunit Interactions J. Biol. Chem., December 19, 2003; 278(51): 51743 - 51748. [Abstract] [Full Text] [PDF]
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 L. E. MacConaill, G. F. Fitzgerald, and D. van Sinderen Investigation of Protein Export in Bifidobacterium breve UCC2003 Appl. Envir. Microbiol., December 1, 2003; 69(12): 6994 - 7001. [Abstract] [Full Text] [PDF]
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K.-C. Kim, L. Geng, and S. Huang Inactivation of a Histone Methyltransferase by Mutations in Human Cancers Cancer Res., November 15, 2003; 63(22): 7619 - 7623. [Abstract] [Full Text] [PDF]
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 T. Amano, S. Yamasaki, N. Yagishita, K. Tsuchimochi, H. Shin, K.-i. Kawahara, S. Aratani, H. Fujita, L. Zhang, R. Ikeda, et al. Synoviolin/Hrd1, an E3 ubiquitin ligase, as a novel pathogenic factor for arthropathy Genes & Dev., October 1, 2003; 17(19): 2436 - 2449. [Abstract] [Full Text] [PDF]
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J. Pei, N. V. Dokholyan, E. I. Shakhnovich, and N. V. Grishin Using protein design for homology detection and active site searches PNAS, September 30, 2003; 100(20): 11361 - 11366. [Abstract] [Full Text] [PDF]
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R. I. Herzog, C. Liu, S. G. Waxman, and T. R. Cummins Calmodulin Binds to the C Terminus of Sodium Channels Nav1.4 and Nav1.6 and Differentially Modulates Their Functional Properties J. Neurosci., September 10, 2003; 23(23): 8261 - 8270. [Abstract] [Full Text] [PDF]
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N. Ariel, A. Zvi, K. S. Makarova, T. Chitlaru, E. Elhanany, B. Velan, S. Cohen, A. M. Friedlander, and A. Shafferman Genome-Based Bioinformatic Selection of Chromosomal Bacillus anthracis Putative Vaccine Candidates Coupled with Proteomic Identification of Surface-Associated Antigens Infect. Immun., August 1, 2003; 71(8): 4563 - 4579. [Abstract] [Full Text] [PDF]
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F. Pessler and N. Hernandez Flexible DNA Binding of the BTB/POZ-domain Protein FBI-1 J. Biol. Chem., August 1, 2003; 278(31): 29327 - 29335. [Abstract] [Full Text] [PDF]
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F. T.S. Nogueira, V. E. De Rosa Jr., M. Menossi, E. C. Ulian, and P. Arruda RNA Expression Profiles and Data Mining of Sugarcane Response to Low Temperature Plant Physiology, August 1, 2003; 132(4): 1811 - 1824. [Abstract] [Full Text] [PDF]
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L. E. MacConaill, D. Butler, M. O'Connell-Motherway, G. F. Fitzgerald, and D. van Sinderen Identification of Two-Component Regulatory Systems in Bifidobacterium infantis by Functional Complementation and Degenerate PCR Approaches Appl. Envir. Microbiol., July 1, 2003; 69(7): 4219 - 4226. [Abstract] [Full Text] [PDF]
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 D. E. GOLL, V. F. THOMPSON, H. LI, W. WEI, and J. CONG The Calpain System Physiol Rev, July 1, 2003; 83(3): 731 - 801. [Abstract] [Full Text] [PDF]
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Y.-S. Noh and R. M. Amasino PIE1, an ISWI Family Gene, Is Required for FLC Activation and Floral Repression in Arabidopsis PLANT CELL, July 1, 2003; 15(7): 1671 - 1682. [Abstract] [Full Text] [PDF]
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M. B. Howard, N. A. Ekborg, L. E. Taylor, R. M. Weiner, and S. W. Hutcheson Genomic Analysis and Initial Characterization of the Chitinolytic System of Microbulbifer degradans Strain 2-40 J. Bacteriol., June 1, 2003; 185(11): 3352 - 3360. [Abstract] [Full Text] [PDF]
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