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Nucleic Acids Research, 2000, Vol. 28, No. 1 260-262
© 2000 Oxford University Press

The SBASE protein domain library, release 7.0: a collection of annotated protein sequence segments

János Murvai1, Kristian Vlahovicek1, Endre Barta2, Bruno Cataletto1 and Sándor Pongor1,2,*

1International Centre for Genetic Engineering and Biotechnology, Area Science Park, 34012 Trieste, Italy and 2ABC Institute for Biochemistry and Protein Research, 2100 Gödöllö, Hungary

SBASE 7.0 is the seventh release of the SBASE protein domain library sequences that contains 237 937 annotated structural, functional, ligand-binding and topogenic segments of proteins, cross-referenced to all major sequence databases and sequence pattern collections. The entries are clustered into over 1811 groups and are provided with two WWW-based search facilities for on-line use. SBASE 7.0 is freely available by anonymous ‘ftp’ file transfer from ftp.icgeb.trieste.it . Automated searching of SBASE with BLAST can be carried out with the WWW servers http://www.icgeb. trieste.it/sbase/ and http://sbase.abc.hu/sbase/

* To whom correspondence should be addressed at: International Centre for Genetic Engineering and Biotechnology, Area Science Park, 34012 Trieste, Italy. Tel: +39 040 3757 300; Fax: +39 040 226 555; Email: pongor@icgeb.trieste.it


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