Nucleic Acids Research, 2000, Vol. 28, No. 1 267-269
© 2000 Oxford University Press
ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons
1Laboratoire de Génétique Cellulaire and 2Laboratoire de Biologie Moléculaire des Relations Plantes-Microorganismes, INRA/CNRS, BP 27, F-31326 Castanet-Tolosan Cedex, France
ProDom contains all protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases (http://www.toulouse. inra.fr/prodom.html ). ProDom-CG results from a similar domain analysis as applied to completed genomes (http://www.toulouse.inra.fr/prodomCG.html ). Recent improvements to the ProDom database and its server include: scaling up to include sequences from TrEMBL, addition of Pfam-A entries to the set of expert validated families, assignment of stable accession numbers, consistency indicators for domain families, domain arrangements of sub-families and links to Pfam-A.
* To whom correspondence should be addressed. Tel: +33 561 28 53 29; Fax: +33 561 28 50 61; Email: dkahn@toulouse.inra.fr
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