Nucleic Acids Research, 2000, Vol. 28, No. 21 4051-4058
© 2000 Oxford University Press
Survey and Summary |
Structural and mechanistic conservation in DNA ligases
Structural Medicine Unit, Department of Haematology, Wellcome Trust Centre for Molecular Mechanisms in Disease, Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge CB2 2XY, UK and 1Center for Molecular Catalysis, Department of Chemistry, College of Natural Sciences, Seoul National University, Seoul 15-742, Korea
DNA ligases are enzymes required for the repair, replication and recombination of DNA. DNA ligases catalyse the formation of phosphodiester bonds at single-strand breaks in double-stranded DNA. Despite their occurrence in all organisms, DNA ligases show a wide diversity of amino acid sequences, molecular sizes and properties. The enzymes fall into two groups based on their cofactor specificity, those requiring NAD+ for activity and those requiring ATP. The eukaryotic, viral and archael bacteria encoded enzymes all require ATP. NAD+-requiring DNA ligases have only been found in prokaryotic organisms. Recently, the crystal structures of a number of DNA ligases have been reported. It is the purpose of this review to summarise the current knowledge of the structure and catalytic mechanism of DNA ligases.
* To whom correspondence should be addressed. Tel: +44 1223 762659; Fax: +44 1223 336827; Email: ajd42@cam.ac.uk
![]()
CiteULike
Connotea
Del.icio.us What's this?
This article has been cited by other articles:
![]() |
M. Korycka-Machala, E. Rychta, A. Brzostek, H. R. Sayer, A. Rumijowska-Galewicz, R. P. Bowater, and J. Dziadek Evaluation of NAD+-Dependent DNA Ligase of Mycobacteria as a Potential Target for Antibiotics Antimicrob. Agents Chemother., August 1, 2007; 51(8): 2888 - 2897. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Kiyonari, K. Takayama, H. Nishida, and Y. Ishino Identification of a Novel Binding Motif in Pyrococcus furiosus DNA Ligase for the Functional Interaction with Proliferating Cell Nuclear Antigen J. Biol. Chem., September 22, 2006; 281(38): 28023 - 28032. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. K. Srivastava, R. P. Tripathi, and R. Ramachandran NAD+-dependent DNA Ligase (Rv3014c) from Mycobacterium tuberculosis: CRYSTAL STRUCTURE OF THE ADENYLATION DOMAIN AND IDENTIFICATION OF NOVEL INHIBITORS J. Biol. Chem., August 26, 2005; 280(34): 30273 - 30281. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. E. Bullerwell and M. W. Gray In Vitro Characterization of a tRNA Editing Activity in the Mitochondria of Spizellomyces punctatus, a Chytridiomycete Fungus J. Biol. Chem., January 28, 2005; 280(4): 2463 - 2470. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Blondal, A. Thorisdottir, U. Unnsteinsdottir, S. Hjorleifsdottir, A. Ævarsson, S. Ernstsson, O. H. Fridjonsson, S. Skirnisdottir, J. O. Wheat, A. G. Hermannsdottir, et al. Isolation and characterization of a thermostable RNA ligase 1 from a Thermus scotoductus bacteriophage TS2126 with good single-stranded DNA ligation properties Nucleic Acids Res., January 7, 2005; 33(1): 135 - 142. [Abstract] [Full Text] [PDF] |
||||
![]() |
H. Zhu and S. Shuman A Primer-dependent Polymerase Function of Pseudomonas aeruginosa ATP-dependent DNA Ligase (LigD) J. Biol. Chem., January 7, 2005; 280(1): 418 - 427. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Lavesa-Curto, H. Sayer, D. Bullard, A. MacDonald, A. Wilkinson, A. Smith, L. Bowater, A. Hemmings, and R. P. Bowater Characterization of a temperature-sensitive DNA ligase from Escherichia coli Microbiology, December 1, 2004; 150(12): 4171 - 4180. [Abstract] [Full Text] [PDF] |
||||
![]() |
P.-M. Girard, B. Kysela, C. J. Harer, A. J. Doherty, and P. A. Jeggo Analysis of DNA ligase IV mutations found in LIG4 syndrome patients: the impact of two linked polymorphisms Hum. Mol. Genet., October 1, 2004; 13(20): 2369 - 2376. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. Liu, A. Burdzy, and L. C. Sowers DNA ligases ensure fidelity by interrogating minor groove contacts Nucleic Acids Res., August 24, 2004; 32(15): 4503 - 4511. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Gong, A. Martins, P. Bongiorno, M. Glickman, and S. Shuman Biochemical and Genetic Analysis of the Four DNA Ligases of Mycobacteria J. Biol. Chem., May 14, 2004; 279(20): 20594 - 20606. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Blondal, S. H. Hjorleifsdottir, O. F. Fridjonsson, A. Aevarsson, S. Skirnisdottir, A. G. Hermannsdottir, G. O. Hreggvidsson, A. V. Smith, and J. K. Kristjansson Discovery and characterization of a thermostable bacteriophage RNA ligase homologous to T4 RNA ligase 1 Nucleic Acids Res., December 15, 2003; 31(24): 7247 - 7254. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. Georlette, V. Blaise, C. Dohmen, F. Bouillenne, B. Damien, E. Depiereux, C. Gerday, V. N. Uversky, and G. Feller Cofactor Binding Modulates the Conformational Stabilities and Unfolding Patterns of NAD+-dependent DNA Ligases from Escherichia coli and Thermus scotoductus J. Biol. Chem., December 12, 2003; 278(50): 49945 - 49953. [Abstract] [Full Text] [PDF] |
||||
![]() |
Z. Tang, K. Wang, W. Tan, J. Li, L. Liu, Q. Guo, X. Meng, C. Ma, and S. Huang Real-time monitoring of nucleic acid ligation in homogenous solutions using molecular beacons Nucleic Acids Res., December 1, 2003; 31(23): e148 - e148. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Odell, L. Malinina, V. Sriskanda, M. Teplova, and S. Shuman Analysis of the DNA joining repertoire of Chlorella virus DNA ligase and a new crystal structure of the ligase-adenylate intermediate Nucleic Acids Res., September 1, 2003; 31(17): 5090 - 5100. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Liu, J. Zhou, M. V. Omelchenko, A. S. Beliaev, A. Venkateswaran, J. Stair, L. Wu, D. K. Thompson, D. Xu, I. B. Rogozin, et al. Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation PNAS, April 1, 2003; 100(7): 4191 - 4196. [Abstract] [Full Text] [PDF] |
||||
![]() |
G. R. Weller, B. Kysela, R. Roy, L. M. Tonkin, E. Scanlan, M. Della, S. K. Devine, J. P. Day, A. Wilkinson, F. d'A. di Fagagna, et al. Identification of a DNA Nonhomologous End-Joining Complex in Bacteria Science, September 6, 2002; 297(5587): 1686 - 1689. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Zhou, O. Kurnasov, D. R. Tomchick, D. D. Binns, N. V. Grishin, V. E. Marquez, A. L. Osterman, and H. Zhang Structure of Human Nicotinamide/Nicotinic Acid Mononucleotide Adenylyltransferase. BASIS FOR THE DUAL SUBSTRATE SPECIFICITY AND ACTIVATION OF THE ONCOLYTIC AGENT TIAZOFURIN J. Biol. Chem., April 5, 2002; 277(15): 13148 - 13154. [Abstract] [Full Text] [PDF] |
||||
![]() |
V. Sriskanda and S. Shuman A second NAD+-dependent DNA ligase (LigB) in Escherichia coli Nucleic Acids Res., December 15, 2001; 29(24): 4930 - 4934. [Abstract] [Full Text] [PDF] |
||||
![]() |
W. W. Newcomb, R. M. Juhas, D. R. Thomsen, F. L. Homa, A. D. Burch, S. K. Weller, and J. C. Brown The UL6 Gene Product Forms the Portal for Entry of DNA into the Herpes Simplex Virus Capsid J. Virol., November 15, 2001; 75(22): 10923 - 10932. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. Riballo, A. J. Doherty, Y. Dai, T. Stiff, M. A. Oettinger, P. A. Jeggo, and B. Kysela Cellular and Biochemical Impact of a Mutation in DNA Ligase IV Conferring Clinical Radiosensitivity J. Biol. Chem., August 10, 2001; 276(33): 31124 - 31132. [Abstract] [Full Text] [PDF] |
||||
![]() |
V. Sriskanda, R. W. Moyer, and S. Shuman NAD+-dependent DNA Ligase Encoded by a Eukaryotic Virus J. Biol. Chem., September 21, 2001; 276(39): 36100 - 36109. [Abstract] [Full Text] [PDF] |
||||







