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Nucleic Acids Research, 2001, Vol. 29, No. 1 264-267
© 2001 Oxford University Press

RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression

Pavel V. Baranov, Olga L. Gurvich, Olivier Fayet1, Marie Françoise Prère1, W. Allen Miller2, Raymond F. Gesteland, John F. Atkins* and Michael C. Giddings

Department of Human Genetics, University of Utah, 15N 2030E Room 7410, Salt Lake City, UT 84112-5330, USA, 1Microbiologie et Génétique Moléculaire, CNRS, 118 route de Narbonne, 31062, Toulouse Cedex, France and 2Plant Pathology Department and L.H. Baker Center for Bioinformatics and Biological Statistics, Iowa State University, Ames 50011-1020, USA

The RECODE database is a compilation of ‘programmed’ translational recoding events taken from the scientific literature and personal communications. The database deals with programmed ribosomal frameshifting, codon redefinition and translational bypass occurring in a variety of organisms. The entries for each event include the sequences of the corresponding genes, their encoded proteins for both the normal and alternate decoding, the types of the recoding events involved, trans-factors and cis-elements that influence recoding. The database is freely available at http://recode.genetics.utah.edu/.

* To whom correspondence should be addressed. Tel: +1 801 585 3434; Fax: +1 801 585 3910; Email: john.atkins{at}genetics.utah.edu


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