Skip Navigation

This Article
Right arrow Full Text Freely available
Right arrow Print PDF (42K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (26)
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Hershberg, R.
Right arrow Articles by Margalit, H.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Hershberg, R.
Right arrow Articles by Margalit, H.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2001, Vol. 29, No. 1 277-00
© 2001 Oxford University Press

PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites

Ruti Hershberg, Gill Bejerano1, Alberto Santos-Zavaleta2 and Hanah Margalit*

Department of Molecular Genetics and Biotechnology and 1School of Computer Science and Engineering, The Hebrew University, Jerusalem, Israel and 2Centro de Investigación sobre Fijación de Nitrógeno, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, México

PromEC is an updated compilation of Escherichia coli mRNA promoter sequences. It includes documentation on the location of experimentally identified mRNA transcriptional start sites on the E.coli chromosome, as well as the actual sequences in the promoter region. The database was updated as of July 2000 and includes 472 entries. PromEC is accessible at http://bioinfo.md.huji.ac.il/marg/promec

* To whom correspondence should be addressed at: Department of Molecular Genetics and Biotechnology, The Hebrew University—Hadassah Medical School, POB 12272 Jerusalem 91120, Israel. Tel.: +972 2 6758614; Fax: +972 2 6784010; Email: hanah{at}md2.huji.ac.il


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Microbiol. Mol. Biol. Rev.Home page
C. L. Turnbough Jr. and R. L. Switzer
Regulation of Pyrimidine Biosynthetic Gene Expression in Bacteria: Repression without Repressors
Microbiol. Mol. Biol. Rev., June 1, 2008; 72(2): 266 - 300.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
C. Sinoquet, S. Demey, and F. Braun
Large-scale computational and statistical analyses of high transcription potentialities in 32 prokaryotic genomes
Nucleic Acids Res., June 1, 2008; 36(10): 3332 - 3340.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
G.-Q. Hu, X. Zheng, Y.-F. Yang, P. Ortet, Z.-S. She, and H. Zhu
ProTISA: a comprehensive resource for translation initiation site annotation in prokaryotic genomes
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D114 - D119.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
T. S. Rani, S. D. Bhavani, and R. S. Bapi
Analysis of E.coli promoter recognition problem in dinucleotide feature space
Bioinformatics, March 1, 2007; 23(5): 582 - 588.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
R. K. Shultzaberger, Z. Chen, K. A. Lewis, and T. D. Schneider
Anatomy of Escherichia coli {sigma}70 promoters
Nucleic Acids Res., February 16, 2007; 35(3): 771 - 788.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
P. Mallik, B. J. Paul, S. T. Rutherford, R. L. Gourse, and R. Osuna
DksA Is Required for Growth Phase-Dependent Regulation, Growth Rate-Dependent Control, and Stringent Control of fis Expression in Escherichia coli.
J. Bacteriol., August 1, 2006; 188(16): 5775 - 5782.
[Abstract] [Full Text] [PDF]

Home page
 Genome Res.Home page
P. Rawal, V. B. R. Kummarasetti, J. Ravindran, N. Kumar, K. Halder, R. Sharma, M. Mukerji, S. K. Das, and S. Chowdhury
Genome-wide prediction of G4 DNA as regulatory motifs: Role in Escherichia coli global regulation.
Genome Res., May 1, 2006; 16(5): 644 - 655.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
A. Kanhere and M. Bansal
Structural properties of promoters: similarities and differences between prokaryotes and eukaryotes
Nucleic Acids Res., June 6, 2005; 33(10): 3165 - 3175.
[Abstract] [Full Text] [PDF]

Home page
 J. Biol. Chem.Home page
K. A. Walker, P. Mallik, T. S. Pratt, and R. Osuna
The Escherichia coli fis Promoter Is Regulated by Changes in the Levels of Its Transcription Initiation Nucleotide CTP
J. Biol. Chem., December 3, 2004; 279(49): 50818 - 50828.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
S. Lacour and P. Landini
{sigma}S-Dependent Gene Expression at the Onset of Stationary Phase in Escherichia coli: Function of {sigma}S-Dependent Genes and Identification of Their Promoter Sequences
J. Bacteriol., November 1, 2004; 186(21): 7186 - 7195.
[Abstract] [Full Text] [PDF]

Home page
 Genome Res.Home page
H. Wang, M. Noordewier, and C. J. Benham
Stress-Induced DNA Duplex Destabilization (SIDD) in the E. coli Genome: SIDD Sites Are Closely Associated With Promoters
Genome Res., August 1, 2004; 14(8): 1575 - 1584.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
C. J. Paredes, I. Rigoutsos, and E. T. Papoutsakis
Transcriptional organization of the Clostridium acetobutylicum genome
Nucleic Acids Res., April 1, 2004; 32(6): 1973 - 1981.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
F. Repoila and S. Gottesman
Temperature Sensing by the dsrA Promoter
J. Bacteriol., November 15, 2003; 185(22): 6609 - 6614.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
K. A. Walker and R. Osuna
Factors Affecting Start Site Selection at the Escherichia coli fis Promoter
J. Bacteriol., September 1, 2002; 184(17): 4783 - 4791.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
R. Tobes and J. L. Ramos
AraC-XylS database: a family of positive transcriptional regulators in bacteria
Nucleic Acids Res., January 1, 2002; 30(1): 318 - 321.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.