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Nucleic Acids Research, 2001, Vol. 29, No. 19 3949-3954
© 2001 Oxford University Press

Crystallographic studies on damaged DNAs IV. N 4-methoxycytosine shows a second face for Watson–Crick base-pairing, leading to purine transition mutagenesis

M. Tofazzal Hossain, Tomoko Sunami, Masaru Tsunoda, Takaaki Hikima, Toshiyuki Chatake, Yoshihito Ueno1, Akira Matsuda1 and Akio Takénaka*

Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Nagatsuta, Midori-ku, Yokohama 226-8501, Japan and 1Graduate School of Pharmaceutical Sciences, Hokkaido University, Nishi 6, Kita 12, Kita-ku, Sapporo 060-0812, Japan

To investigate the mutation mechanism of purine transitions in DNA damaged with methoxyamine, a  DNA dodecamer with the sequence d(CGCAAATTmo4CGCG), where mo4C is 2'-deoxy-N4-methoxycytidine, has been synthesized and the crystal structure determined by X-ray analysis. The duplex structure is similar to that of the original undamaged B-form dodecamer, indicating that the methoxylation does not affect the overall DNA conformation. Electron density maps clearly show that the two mo4C residues form Watson–Crick-type base pairs with the adenine residues of the opposite strand and that the methoxy groups of mo4C adopt the anti conformation to N3 around the C4–N4 bond. For the pair formation through hydrogen bonds the mo4C residues are in the imino tautomeric state. Together with previous work, the present work establishes that the methoxylated cytosine residue can present two alternate faces for Watson–Crick base-pairing, thanks to the amino{leftrightarrow}imino tautomerism allowed by methoxylation. Based on this property, two gene transition routes are proposed.

* To whom correspondence should be addressed. Tel: +81 45 924 5709; Fax: +81 45 924 5748; Email: atakenak{at}bio.titech.ac.jpPresent address:Yoshihito Ueno, Faculty of Engineering, Gifu University, Yanagido, Gifu 501-1193, Japan


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