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Nucleic Acids Research, 2002, Vol. 30, No. 1 103-105
© 2002 Oxford University Press

Gramene: a resource for comparative grass genomics

Doreen Ware, Pankaj Jaiswal1, Junjian Ni1, Xiaokang Pan, Kuan Chang, Kenneth Clark, Leonid Teytelman, Steve Schmidt, Wei Zhao, Samuel Cartinhour2, Susan McCouch1 and Lincoln Stein*

Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA, 1Department of Plant Breeding, Cornell University, Ithaca NY 14853-1901, USA and 2USDA–ARS Center for Agricultural Bioinformatics, 626 Rhodes Hall, Cornell Theory Center, Ithaca, NY 14853, USA

Gramene (http://www.gramene.org) is a comparative genome mapping database for grasses and a community resource for rice. Rice, in addition to being an economically important crop, is also a model monocot for understanding other agronomically important grass genomes. Gramene replaces the existing AceDB database ‘RiceGenes’ with a relational database based on Oracle. Gramene provides curated and integrative information about maps, sequence, genes, genetic markers, mutants, QTLs, controlled vocabularies and publications. Its aims are to use the rice genetic, physical and sequence maps as fundamental organizing units, to provide a common denominator for moving from one crop grass to another and is to serve as a portal for interconnecting with other web-based crop grass resources. This paper describes the initial steps we have taken towards realizing these goals.

* To whom correspondence should be addressed. Tel: +1 516 367 8380; Fax: +1 516 367 8389; Email: lstein{at}cshl.org


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