Nucleic Acids Research, 2002, Vol. 30, No. 1 17-20
© 2002 Oxford University Press
GenBank
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The GenBank sequence database incorporates publicly available DNA sequences of more than 105 000 different organisms, primarily through direct submission of sequence data from individual laboratories and large-scale sequencing projects. Most submissions are made using the BankIt (web) or Sequin programs and accession numbers are assigned by GenBank staff upon receipt. Data exchange with the EMBL Data Library and the DNA Data Bank of Japan helps ensure comprehensive worldwide coverage. GenBank data is accessible through NCBI’s integrated retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical literature via PubMed. Sequence similarity searching is provided by the BLAST family of programs. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. NCBI also offers a wide range of World Wide Web retrieval and analysis services based on GenBank data. The GenBank database and related resources are freely accessible via the NCBI home page at http://www.ncbi.nlm.nih.gov.
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P. Mallick, R. Weiss, and D. Eisenberg The directional atomic solvation energy: An atom-based potential for the assignment of protein sequences to known folds PNAS, December 10, 2002; 99(25): 16041 - 16046. [Abstract] [Full Text] [PDF]
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E. Cheuk, C. D'Souza, N. Hu, Y. Liu, H. Lang, and J. W. Chamberlain Human MHC Class I Transgenic Mice Deficient for H2 Class I Expression Facilitate Identification and Characterization of New HLA Class I-Restricted Viral T Cell Epitopes J. Immunol., November 15, 2002; 169(10): 5571 - 5580. [Abstract] [Full Text] [PDF]
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Y. Fan, E. Linardopoulou, C. Friedman, E. Williams, and B. J. Trask Genomic Structure and Evolution of the Ancestral Chromosome Fusion Site in 2q13-2q14.1 and Paralogous Regions on Other Human Chromosomes Genome Res., November 1, 2002; 12(11): 1651 - 1662. [Abstract] [Full Text] [PDF]
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H. G. R. Thompson, J. W. Harris, B. J. Wold, S. R. Quake, and J. P. Brody Identification and Confirmation of a Module of Coexpressed Genes Genome Res., October 1, 2002; 12(10): 1517 - 1522. [Abstract] [Full Text] [PDF]
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L. D. Stein, C. Mungall, S. Shu, M. Caudy, M. Mangone, A. Day, E. Nickerson, J. E. Stajich, T. W. Harris, A. Arva, et al. The Generic Genome Browser: A Building Block for a Model Organism System Database Genome Res., October 1, 2002; 12(10): 1599 - 1610. [Abstract] [Full Text] [PDF]
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K. Ominato, H. Akita, A. Suzuki, F. Kijima, T. Yoshino, M. Yoshino, Y. Chiba, H. Onouchi, and S. Naito Identification of a Short Highly Conserved Amino Acid Sequence as the Functional Region Required for Posttranscriptional Autoregulation of the Cystathionine gamma -Synthase Gene in Arabidopsis J. Biol. Chem., September 20, 2002; 277(39): 36380 - 36386. [Abstract] [Full Text] [PDF]
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 D. R. Masys Effects Of Current And Future Information Technologies On The Health Care Workforce Health Aff., September 1, 2002; 21(5): 33 - 41. [Abstract] [Full Text] [PDF]
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D. B. Goto and S. Naito AtMRD1 and AtMRU1, Two Novel Genes with Altered mRNA Levels in the Methionine Over-Accumulating mto1-1 Mutant of Arabidopsis thaliana Plant Cell Physiol., August 1, 2002; 43(8): 923 - 931. [Abstract] [Full Text] [PDF]
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G. L. Moore and C. D. Maranas eCodonOpt: a systematic computational framework for optimizing codon usage in directed evolution experiments Nucleic Acids Res., June 1, 2002; 30(11): 2407 - 2416. [Abstract] [Full Text] [PDF]
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J. M. Young and B. J. Trask The sense of smell: genomics of vertebrate odorant receptors Hum. Mol. Genet., May 15, 2002; 11(10): 1153 - 1160. [Abstract] [Full Text] [PDF]
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S. Goto, Y. Okuno, M. Hattori, T. Nishioka, and M. Kanehisa LIGAND: database of chemical compounds and reactions in biological pathways Nucleic Acids Res., January 1, 2002; 30(1): 402 - 404. [Abstract] [Full Text] [PDF]
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