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Nucleic Acids Research, 2002, Vol. 30, No. 1 50-51
© 2002 Oxford University Press

EXProt: a database for proteins with an experimentally verified function

Björn M. Ursing1,*, Frank H. J. van Enckevort1, Jack A. M. Leunissen1 and Roland J. Siezen1,2

1Centre for Molecular and Biomolecular Informatics (CMBI), University of Nijmegen, PO Box 9010, 6500 GL Nijmegen, The Netherlands and 2NIZO Food Research, PO Box 20, 6710 BA Ede, The Netherlands

EXProt is a non-redundant protein database containing a selection of entries from genome annotation projects and public databases, aimed at including only proteins with an experimentally verified function. In EXProt release 2.0 we have collected entries from the Pseudomonas aeruginosa community annotation project (PseudoCAP), the Escherichia coli genome and proteome database (GenProtEC) and the translated coding sequences from the Prokaryotes division of EMBL nucleotide sequence database, which are described as having an experimentally verified function. Each entry in EXProt has a unique ID number and contains information about the species, amino acid sequence, functional annotation and, in most cases, links to references in MEDLINE/PubMed and to the entry in the original database. EXProt is indexed in SRS at CMBI (http://www.cmbi.kun.nl/srs/) and can be searched with BLAST and FASTA through the EXProt web page (http://www.cmbi.kun.nl/EXProt/).

* To whom correspondence should be addressed. Tel: +31 24 365 3379; Fax: +31 24 365 2977; Email: ursing{at}cmbi.kun.nl


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