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Nucleic Acids Research, 2003, Vol. 31, No. 1 13-16
© 2003 Oxford University Press

DNA Data Bank of Japan (DDBJ) in XML

S. Miyazaki, H. Sugawara, T. Gojobori and Y. Tateno*

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata, Mishima 411-8540, Japan

*To whom correspondence should be addressed. Tel: +81 559816857; Fax: +81 559816858; Email: ytateno{at}genes.nig.ac.jp
The authors wish it to be known that, in their opinion, all the authors should be regarded as joint First Authors

ABSTRACT

The DNA Data Bank of Japan (DDBJ, http://www.ddbj.nig.ac.jp) has collected and released more entries and bases than last year. This is mainly due to large-scale submissions from Japanese sequencing teams on mouse, rice, chimpanzee, nematoda and other organisms. The contributions of DDBJ over the past year are 17.3% (entries) and 10.3% (bases) of the combined outputs of the International Nucleotide Sequence Databases (INSD). Our complete genome sequence database, Genome Information Broker (GIB), has been improved by incorporating XML. It is now possible to perform a more sophisticated database search against the new GIB than the ordinary BLAST or FASTA search.


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