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Nucleic Acids Research, 2003, Vol. 31, No. 1 432-435
© 2003 Oxford University Press

Plant snoRNA database

John W. S. Brown*,1, Manuel Echeverria3, Liang-Hu Qu4, Todd M. Lowe5, Jean-Pierre Bachellerie6, Alexander Hüttenhofer7, James P. Kastenmayer8, Pamela J. Green9, Paul Shaw2 and Dave F. Marshall2

1 Gene Expression Programme, Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA, UK 2 Computational Biology Programme, Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA, UK 3 Laboratoire Génome et Développement des Plantes, UMR CNRS 5096, Université de Perpignan, 66860 Perpignan, France 4 Key Laboratory of Gene Engineering of the Ministry of Education, Biotechnology Research Centre, Zhongshan University, Guangzhou 510275, People's Republic of China 5 Department of Computer Engineering, 227 Sinsheimer Labs, University of California, 1156 High Street, Santa Cruz, CA 95064, USA 6 Laboratoire de Biologie Moléculaire de Eucaryote du CNRS, Université Paul-Sabatier, 31062 Toulouse, France 7 Institute of Experimental Pathology, University of Münster, Von-Esmark Strasse 56, 48149 Münster, Germany 8 Michigan State University, Department of Energy, Plant Research Laboratory, East Lansing, MI 48824-1312, USA 9 Delaware Biotechnology Institute, University of Delaware, Newark, DE 11971, USA

*To whom correspondence should be addressed. Tel: +44 1382 568533; Fax: +44 1382 562426; Email: jbrown{at}scri.sari.ac.uk

ABSTRACT

The Plant snoRNA database (http://www.scri.sari.ac.uk/plant_snoRNA/) provides information on small nucleolar RNAs from Arabidopsis and eighteen other plant species. Information includes sequences, expression data, methylation and pseudouridylation target modification sites, initial gene organization (polycistronic, single gene and intronic) and the number of gene variants. The Arabidopsis information is divided into box C/D and box H/ACA snoRNAs, and within each of these groups, by target sites in rRNA, snRNA or unknown. Alignments of orthologous genes and gene variants from different plant species are available for many snoRNA genes. Plant snoRNA genes have been given a standard nomenclature, designed wherever possible, to provide a consistent identity with yeast and human orthologues.


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