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Nucleic Acids Research, 2003, Vol. 31, No. 1 502-504
© 2003 Oxford University Press

RNABase: an annotated database of RNA structures

Venkatesh L. Murthy and George D. Rose*

Department of Biophysics, Johns Hopkins University, Jenkins Hall, 3400 N. Charles Street, Baltimore, MD 21218, USA

*To whom correspondence should be addressed. Tel: +410 5167244; Fax: +410 5164118; Email: grose{at}jhu.edu

ABSTRACT

RNABase is a unified database of all three-dimensional structures containing RNA deposited in either the Protein Data Bank (PDB) or Nucleic Acid Data Base (NDB). For each structure, RNABase contains a brief summary as well as annotation of conformational parameters, identification of possible model errors, Ramachandran-style conformational maps and classification of ribonucleotides into conformers. These same analyses can also be performed on structures submitted by users. To facilitate access, structures are automatically placed into a variety of functional and structural categories, including: ribozymes, pseudoknots, etc. RNABase can be freely accessed on the web at http://www.rnabase.org. We are committed to maintaining this database indefinitely.


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